Miyakogusa Predicted Gene
- Lj1g3v1583620.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1583620.1 Non Chatacterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,RING/U-box,NULL; U-box,U box domain; Modified RING
finger domain,U box domain; no description,Zinc
f,NODE_51503_length_588_cov_139.940475.path1.1
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318742 similar to UniRef100_Q9LF41 Cluster: Ubiquitin... 666 0.0
gnl|LJGI|TC58656 homologue to UniRef100_A7PN20 Cluster: Chromoso... 666 0.0
gnl|LJGI|TC77951 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-... 658 0.0
gnl|LJGI|BP052636 similar to UniRef100_Q9LF41 Cluster: Ubiquitin... 426 e-119
gnl|LJGI|AV778557 weakly similar to UniRef100_Q9LF41 Cluster: Ub... 232 1e-60
gnl|LJGI|BP065454 168 1e-41
>gnl|LJGI|FS318742 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (22%)
Length = 878
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 472
Query: 61 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 532
Query: 121 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 592
Query: 181 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 652
Query: 241 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 712
Query: 301 accacaaatggggaaaaaatgttgattgattaggaa 336
||||||||||||||||||||||||||||||||||||
Sbjct: 713 accacaaatggggaaaaaatgttgattgattaggaa 748
>gnl|LJGI|TC58656 homologue to UniRef100_A7PN20 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 1476
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 1006
Query: 61 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 1066
Query: 121 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 1126
Query: 181 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 1186
Query: 241 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 1246
Query: 301 accacaaatggggaaaaaatgttgattgattaggaa 336
||||||||||||||||||||||||||||||||||||
Sbjct: 1247 accacaaatggggaaaaaatgttgattgattaggaa 1282
>gnl|LJGI|TC77951 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (33%)
Length = 1302
Score = 658 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Plus
Query: 1 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atggatgccgaagctactctgggagaaataccagatgaattccttgatccgattcaatac 801
Query: 61 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actttgatgaaggatccagttatcttgccttcttcaaggatcacggttgatcgtcctgtc 861
Query: 121 attcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 862 attcagagacatcttcttagtgatgcttttgacccattcaaccgttctcatcttactgcg 921
Query: 181 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gatatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcag 981
Query: 241 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 1041
Query: 301 accacaaatggggaaaaaatgttgattgattaggaa 336
||||||||||||||||||||||||||||||||||||
Sbjct: 1042 accacaaatggggaaaaaatgttgattgattaggaa 1077
>gnl|LJGI|BP052636 similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion degradation
protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (7%)
Length = 484
Score = 426 bits (215), Expect = e-119
Identities = 276/295 (93%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 40 ttccttgatccgattcaatacactttgatgaaggatccagttatcttgccttcttcaagg 99
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 484 ttccttgatccgattcaatacactttgatgaaggatccagtactcttgccttcttcaagg 425
Query: 100 atcacggttgatcgtcctgtcattcagagacatcttcttagtgatgcttctgacccattc 159
||| || ||||||| |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 424 atcccgattgatcggcctgtcattcagagacatcttcgtagtgatgcttcggacccattc 365
Query: 160 aaccgttctcatcttactgcggatatgctgattcctgatgttgaactaaaagcacgaatt 219
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 364 aaccgttctcatcttactgcggatatgctgattcctgatcttgaactaaaagcacgaatt 305
Query: 220 gaggagtttgtcaggtctcaggaaatgaagaaacacggtgaagggctaagcatacagagt 279
|||||||||||||| |||| |||||||||||||| || ||||||||||||||| ||||||
Sbjct: 304 gaggagtttgtcagctctccggaaatgaagaaacccgctgaagggctaagcatccagagt 245
Query: 280 agtagcaaggccacca-ttcagaccacaaatggggaaaaaatgttgattgattag 333
| |||| ||||||||| |||||||||||||| |||||||||| ||| ||||||||
Sbjct: 244 actagctaggccaccacttcagaccacaaatcgggaaaaaatattgcttgattag 190
>gnl|LJGI|AV778557 weakly similar to UniRef100_Q9LF41 Cluster: Ubiquitin-fusion
degradation protein-like; n=1; Arabidopsis thaliana|Rep:
Ubiquitin-fusion degradation protein-like - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 500
Score = 232 bits (117), Expect = 1e-60
Identities = 195/217 (89%), Gaps = 3/217 (1%)
Strand = Plus / Minus
Query: 123 tcagagacatcttcttagtgatgcttctgacccattcaaccgttctcatcttactgcgga 182
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 500 tcagagacatcttcttagtgatgcttctgaccccgtccaccgttctcatcttactgcgga 441
Query: 183 tatgctgattcctgatgttgaactaaaagcacgaattgaggagtttgtcaggtctcagga 242
|||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct: 440 tatgctgattcctgatgttggacttaaagcacgaattgaggagtttgtccggtctcaggc 381
Query: 243 aatgaagaaacacggtgaagggctaagca-tacagagtagt-agcaaggccaccattcag 300
||||||||||| || |||||||||||||| ||| ||||||| ||| ||||| || ||| |
Sbjct: 380 aatgaagaaacccgctgaagggctaagcactaccgagtagtcagccaggccccccttccg 321
Query: 301 accacaaat-ggggaaaaaatgttgattgattaggaa 336
||| | ||| |||| || |||||||||||| ||||||
Sbjct: 320 acccccaatcgggggaacaatgttgattgaataggaa 284
>gnl|LJGI|BP065454
Length = 240
Score = 168 bits (85), Expect = 1e-41
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 241 gaaatgaagaaacacggtgaagggctaagcatacagagtagtagcaaggccaccattcag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaatgaagaaactcggtgaagggctaagcatacagagtagtagcaaggccaccattcag 181
Query: 301 accacaaatggggaaaaaatgttgattgattag 333
||||||||||||||||||||| |||||||||||
Sbjct: 180 accacaaatggggaaaaaatgctgattgattag 148