Miyakogusa Predicted Gene

Lj1g3v1562450.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1562450.1 tr|D7MPH6|D7MPH6_ARALL Transcription factor/
transcription regulator (Fragment) OS=Arabidopsis
lyrat,29.1,9e-17,seg,NULL,CUFF.27536.1
         (1081 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59739                                                       98   1e-19

>gnl|LJGI|TC59739 
          Length = 2898

 Score = 97.6 bits (49), Expect = 1e-19
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                        
Query: 540  cgatcaagtcgatgagaatcagggaactgataatgaaagtgagatgcatgaagacacaga 599
            |||| |||| ||||| |||||||||||||| | |||||| |||||||||||||| |||||
Sbjct: 1442 cgataaagttgatgaaaatcagggaactgacactgaaagcgagatgcatgaagatacaga 1501

                                             
Query: 600  agaaattaatgcattgctttactcagacagtga 632
             || || ||||||||||||||||| ||||||||
Sbjct: 1502 ggagataaatgcattgctttactctgacagtga 1534



 Score = 93.7 bits (47), Expect = 2e-18
 Identities = 98/115 (85%)
 Strand = Plus / Plus

                                                                        
Query: 194  atgaaccccatggttggttttattgtttgcctcgctttcggcaaggatttattcctgctc 253
            ||||||| ||||||||||||||||||||||||||||| || || |||||||  |||||||
Sbjct: 1099 atgaacctcatggttggttttattgtttgcctcgcttccgacagggatttacgcctgctc 1158

                                                                   
Query: 254  caagcttcgctgctgaggaaaaaccctctgctgaccatgtgaaaggttttaggga 308
            | |||| | |||||||||  |||||| |||||  ||||| |||| |||| |||||
Sbjct: 1159 cgagctccactgctgaggttaaaccccctgctagccatgggaaaagtttaaggga 1213



 Score = 71.9 bits (36), Expect = 8e-12
 Identities = 132/164 (80%)
 Strand = Plus / Plus

                                                                        
Query: 911  caggcaataagaagatgaaaaaggagaagatacgagatgtcctgagcgttctagagagca 970
            |||||||||||||||||| |||||||||||||| ||||||  | |||||| |  |   ||
Sbjct: 1828 caggcaataagaagatgagaaaggagaagatacaagatgttttaagcgttttgcaacaca 1887

                                                                        
Query: 971  taattcccggtggcaaggataagaacccggtcatgcttctcgaagatgccataagttgct 1030
            |  |||| ||||| ||||| ||| ||||  ||  ||| || || || |||||| ||||||
Sbjct: 1888 ttgttcctggtgggaaggacaaggacccaatccagctccttgatgaagccatacgttgct 1947

                                                        
Query: 1031 tgaaatccttgaaacacaaggctaaagctctaggcctcgatgcc 1074
            ||||||||||||||  |||||||| ||| || || |||||||||
Sbjct: 1948 tgaaatccttgaaagtcaaggctagagcacttggactcgatgcc 1991