Miyakogusa Predicted Gene
- Lj1g3v1526020.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1526020.1 Non Chatacterized Hit- tr|K3YI09|K3YI09_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si013878,42.86,0.0006,seg,NULL; zf-RING_2,Zinc finger, RING-type;
no description,Zinc finger, RING/FYVE/PHD-type; PUTATIVE,CUFF.27447.1
(1108 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78125 similar to UniRef100_Q84KA9 Cluster: RING/C3HC4... 1417 0.0
gnl|LJGI|BW619319 weakly similar to UniRef100_A7NUS9 Cluster: Ch... 529 e-149
gnl|LJGI|AV421731 weakly similar to UniRef100_Q6K5E4 Cluster: RI... 420 e-117
gnl|LJGI|DC594969 123 2e-27
>gnl|LJGI|TC78125 similar to UniRef100_Q84KA9 Cluster: RING/C3HC4/PHD zinc finger-like
protein; n=2; Cucumis melo|Rep: RING/C3HC4/PHD zinc
finger-like protein - Cucumis melo (Muskmelon), partial
(27%)
Length = 793
Score = 1417 bits (715), Expect = 0.0
Identities = 718/719 (99%)
Strand = Plus / Plus
Query: 390 caaaatcggaagggccacgctggaatgcgccgtgtgcttgaacgagtttcgcgaccatga 449
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaatcggaagggcgacgctggaatgcgccgtgtgcttgaacgagtttcgcgaccatga 60
Query: 450 aacgctgcgtttgattccgaagtgcagtcatgtcttccacgccgaatgcgtcgacgcttg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgctgcgtttgattccgaagtgcagtcatgtcttccacgccgaatgcgtcgacgcttg 120
Query: 510 gctggtgaaccagtctacctgccccgtttgcagagcaaaccttcttcagggagacgctgc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctggtgaaccagtctacctgccccgtttgcagagcaaaccttcttcagggagacgctgc 180
Query: 570 tactaccttcgtggcggttcagattccagatccggaaggtcacgggtcaacaacaccagt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tactaccttcgtggcggttcagattccagatccggaaggtcacgggtcaacaacaccagt 240
Query: 630 acccggttcaggtgacccgtcacccaatagagttgataacagtagtaataatcaatcgcc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acccggttcaggtgacccgtcacccaatagagttgataacagtagtaataatcaatcgcc 300
Query: 690 taaggtgggtagtgatttggttaatcagaaccgtccggttcggtcgaggtcaaccgggtt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaggtgggtagtgatttggttaatcagaaccgtccggttcggtcgaggtcaaccgggtt 360
Query: 750 taggagctggtttccgcggtcgcattccacaggtcactcgttgggtgaggattgggagcg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taggagctggtttccgcggtcgcattccacaggtcactcgttgggtgaggattgggagcg 420
Query: 810 gttcacactgaggttaccagaggaggtgcggaaccggttggttaattccacgctgaaccg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttcacactgaggttaccagaggaggtgcggaaccggttggttaattccacgctgaaccg 480
Query: 870 gaccactagttgtggcgccacgtttatgcgggtgagcagtgggaggagcggttatagggc 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaccactagttgtggcgccacgtttatgcgggtgagcagtgggaggagcggttatagggc 540
Query: 930 gaggagtgtcggtaggagcccgattggtgggagcaatgagcggtcagaccgacgattctt 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaggagtgtcggtaggagcccgattggtgggagcaatgagcggtcagaccgacgattctt 600
Query: 990 ttggactccaccgtttgtgagccgagcgggttcaaccaggtcgccgaagcctaataaggc 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttggactccaccgtttgtgagccgagcgggttcaaccaggtcgccgaagcctaataaggc 660
Query: 1050 aatggatgatatgggggaacgatcttcagatcgtctattcactggtggtgagggttaat 1108
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatggatgatatgggggaacgatcttcagatcgtctattcactggtggtgagggttaat 719
>gnl|LJGI|BW619319 weakly similar to UniRef100_A7NUS9 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 475
Score = 529 bits (267), Expect = e-149
Identities = 351/379 (92%)
Strand = Plus / Plus
Query: 164 gactcaagttcgacaagtccatggccatcgtcctcgtgatcctcgtggtcgtgttcttca 223
|||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||
Sbjct: 94 gactcaagttcgacaagtccatggccattgtcttcgtgatcctggtagtcgtgttcttca 153
Query: 224 tgctgggcttcctctccatctacacgcgccagtgcacggagcgtgggataagagggaggt 283
|||||||||||||||||||||| | |||| ||||||| |||||||||||||||||| |
Sbjct: 154 tgctgggcttcctctccatctaaatgcgctagtgcacagagcgtgggataagagggcgac 213
Query: 284 tcgacctcgccttccccatcggcggcagcaactggcgccaccgcggactcgacccggaga 343
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tcgacctcgcgttccccatcggcggcagcaactggcgccaccgcggactcgacccggaga 273
Query: 344 tcatcgattccttccccaccttcgtctactccgccgtgaagggactcaaaatcggaaggg 403
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 274 tcatcgattccttccccaccttcgtttactccgccgtgaagggcctcaaaatcggaaggg 333
Query: 404 ccacgctggaatgcgccgtgtgcttgaacgagtttcgcgaccatgaaacgctgcgtttga 463
||||||||||||||| ||| ||| | |||||||| ||||||||||||||||||||| ||
Sbjct: 334 ccacgctggaatgcgtcgtttgcctcaacgagttcggcgaccatgaaacgctgcgttcga 393
Query: 464 ttccgaagtgcagtcatgtcttccacgccgaatgcgtcgacgcttggctggtgaaccagt 523
||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 394 ttccgaagtgcagccacgttttccacgccgaatgcgtcgatgcttggctggtgagccact 453
Query: 524 ctacctgccccgtttgcag 542
||||||| |||||||||||
Sbjct: 454 ctacctgacccgtttgcag 472
Score = 61.9 bits (31), Expect = 8e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 102 gccgccggccaccgcacagctaccaaacgtactct 136
|||||||||||||||||||||||||||||| ||||
Sbjct: 56 gccgccggccaccgcacagctaccaaacgtgctct 90
>gnl|LJGI|AV421731 weakly similar to UniRef100_Q6K5E4 Cluster: RING-H2 zinc finger
protein ATL6-like; n=1; Oryza sativa Japonica Group|Rep:
RING-H2 zinc finger protein ATL6-like - Oryza sativa
subsp. japonica (Rice), partial (7%)
Length = 308
Score = 420 bits (212), Expect = e-117
Identities = 242/252 (96%)
Strand = Plus / Plus
Query: 102 gccgccggccaccgcacagctaccaaacgtactctccccaccaccaacagacaagctctc 161
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 57 gccgccggccaccgcacagctaccaaacgtgttgtccccaccaccaacagacaagctctc 116
Query: 162 cggactcaagttcgacaagtccatggccatcgtcctcgtgatcctcgtggtcgtgttctt 221
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 117 cggactcaagttcgacaagtccatggccatcgtcctcgtgatcctggtagtcgtgttctt 176
Query: 222 catgctgggcttcctctccatctacacgcgccagtgcacggagcgtgggataagagggag 281
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 177 catgctgggcttcctctccatctacacgcgctagtgcacggagcgtgggataagagggcg 236
Query: 282 gttcgacctcgccttccccatcggcggcagcaactggcgccaccgcggactcgacccgga 341
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 actcgacctcgcgttccccatcggcggcagcaactggcgccaccgcggactcgacccgga 296
Query: 342 gatcatcgattc 353
||||||||||||
Sbjct: 297 gatcatcgattc 308
>gnl|LJGI|DC594969
Length = 320
Score = 123 bits (62), Expect = 2e-27
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 atgaccactctcacactcaaaaaaccacaccgccacagtttcaaccacagtcatggcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atgaccactctcacactcaaaaaaccacaccgccacagtttcaaccacagtcatggcctt 278
Query: 61 ca 62
||
Sbjct: 279 ca 280