Miyakogusa Predicted Gene

Lj1g3v1514800.2
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1514800.2 tr|G7J3Z0|G7J3Z0_MEDTR Seryl-tRNA synthetase
OS=Medicago truncatula GN=MTR_3g099470 PE=4
SV=1,84.66,0,TRNASYNTHSER,Serine-tRNA ligase, type1;
tRNA-synt_2b,Aminoacyl-tRNA synthetase, class II (G/ H/ P/
S,CUFF.27429.2
         (1542 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77983 similar to UniRef100_Q944K1 Cluster: At1g11870/...  1624   0.0  
gnl|LJGI|TC80515 similar to UniRef100_A7R7W1 Cluster: Chromosome...  1378   0.0  
gnl|LJGI|BP067530 similar to UniRef100_Q944K1 Cluster: At1g11870...   176   3e-43

>gnl|LJGI|TC77983 similar to UniRef100_Q944K1 Cluster: At1g11870/F12F1_29; n=1;
            Arabidopsis thaliana|Rep: At1g11870/F12F1_29 -
            Arabidopsis thaliana (Mouse-ear cress), partial (54%)
          Length = 1123

 Score = 1624 bits (819), Expect = 0.0
 Identities = 884/900 (98%), Gaps = 6/900 (0%)
 Strand = Plus / Plus

                                                                        
Query: 643  ctccaactgggaaaggatcttgatctctttgattttgatgctgctgcagaggttagtggg 702
            |||||||||| ||||||||| |||||||| || ||||||||| |||||||||||||||||
Sbjct: 1    ctccaactgg-aaaggatct-gatctctt-gactttgatgctactgcagaggttagtggg 57

                                                                        
Query: 703  tcaaagttctactacctgaaaaatgaagcggttttgttagagatggctcttttaaattgg 762
            ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 58   tcaaagttctactac-tgaaaa-tgaagcggttt-gttagagatggctcttttaaattgg 114

                                                                        
Query: 763  acactctcagaagtgatgaaaagaggctttactcctataacaactcctgaaattgtacgg 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115  acactctcagaagtgatgaaaagaggctttactcctataacaactcctgaaattgtacgg 174

                                                                        
Query: 823  tcctctgttgttgaaaaatgtgggttccaacctcgtgcggataatacccagatttattcc 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175  tcctctgttgttgaaaaatgtgggttccaacctcgtgcggataatacccagatttattcc 234

                                                                        
Query: 883  atcgaagacagtgaccaatgccttattggcactgcagagattcctgttgggggccttcat 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235  atcgaagacagtgaccaatgccttattggcactgcagagattcctgttgggggccttcat 294

                                                                        
Query: 943  atggattctattcttgctgactcattgttacccttaaaatatgtggcattttctcattgt 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295  atggattctattcttgctgactcattgttacccttaaaatatgtggcattttctcattgt 354

                                                                        
Query: 1003 ttccgtaccgaggcaggtgctgctggcgctgcaacaaggggtctttatcgagttcaccag 1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355  ttccgtaccgaggcaggtgctgctggcgctgcaacaaggggtctttatcgagttcaccag 414

                                                                        
Query: 1063 ttcagcaaggttgaaatgtttgttttttgccgtccggaagagagtgaatattatcatcaa 1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  ttcagcaaggttgaaatgtttgttttttgccgtccggaagagagtgaatattatcatcaa 474

                                                                        
Query: 1123 gagctcattaaaattgaagaagacatcttctcatcccttgggttacattttaaaattttg 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  gagctcattaaaattgaagaagacatcttctcatcccttgggttacattttaaaattttg 534

                                                                        
Query: 1183 gatatggcttctgaagatttaggtgcacccgcttatcgtaaatccgatgtggaggcatgg 1242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  gatatggcttctgaagatttaggtgcacccgcttatcgtaaatccgatgtggaggcatgg 594

                                                                        
Query: 1243 atgccaggtttagaacggtttggtgagatctcaagcgcatcaaattgcacagactatcag 1302
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 595  atgccaggtttagaacggtttggtgagatctcaagcgcatccaattgcacagactatcag 654

                                                                        
Query: 1303 agccgtcggttgggaatccggtatcgtccatcagaagcacttgcacctggtccnnnnnnn 1362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 655  agccgtcggttgggaatccggtatcgtccatcagaagcacttgcacctggtccaaaaaaa 714

                                                                        
Query: 1363 tctaaaggcaaccttgctccaccacagtttgtccacacattaaatgcaacagcatgtgca 1422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  tctaaaggcaaccttgctccaccacagtttgtccacacattaaatgcaacagcatgtgca 774

                                                                        
Query: 1423 gtaccgcggatgattatatgcttacttgagaattaccaacaagaagatgggtctgttctt 1482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  gtaccgcggatgattatatgcttacttgagaattaccaacaagaagatgggtctgttctt 834

                                                                        
Query: 1483 atccctgagcccttgaggcctttcatggggggccttaacattatagctagaaaatcataa 1542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  atccctgagcccttgaggcctttcatggggggccttaacattatagctagaaaatcataa 894


>gnl|LJGI|TC80515 similar to UniRef100_A7R7W1 Cluster: Chromosome undetermined
           scaffold_2065, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_2065,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (53%)
          Length = 729

 Score = 1378 bits (695), Expect = 0.0
 Identities = 715/719 (99%), Gaps = 2/719 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtttacacggttgcctcaacatcacaaccttacaaagtttcaagctcggtgcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  atgggtttacacggttgcctcaacatcacaaccttacaaagtttcaagctcggtgcattt 72

                                                                       
Query: 61  cgcacttacccatcttcacaccaaagaaccaaagctccattcctttattcgcagaaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  cgcacttacccatcttcacaccaaagaaccaaagctccattcctttattcgcagaaacca 132

                                                                       
Query: 121 tcattgccacgacccatcaaagctctctccacctccgccgccgccgttgaaacatccccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcattgccacgacccatcaaagctctctccacctccgccgccgccgttgaaacatccccg 192

                                                                       
Query: 181 tcaacaactgagacttccgacgaaaagggtgggaagcctcaatggaaagcaacaatagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcaacaactgagacttccgacgaaaagggtgggaagcctcaatggaaagcaacaatagac 252

                                                                       
Query: 241 ttcaagtggataaaggataacaaggaagctgttgctgccaatataaggaaccgcaactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttcaagtggataaaggataacaaggaagctgttgctgccaatataaggaaccgcaactct 312

                                                                       
Query: 301 catgctaatttggaccttgtgctccacctgtatgacagcatgtttcaccttcagaaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catgctaatttggaccttgtgctccacctgtatgacagcatgtttcaccttcagaaggaa 372

                                                                       
Query: 361 gttgagagggttcgtggagagagaaatgcagtagctaataaaatgaaaggaaaaatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gttgagagggttcgtggagagagaaatgcagtagctaataaaatgaaaggaaaaatagaa 432

                                                                       
Query: 421 ccatctgagcgccagagattaattgaagaagggaagaaattgaaagaggggcttattgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccatctgagcgccagagattaattgaagaagggaagaaattgaaagaggggcttattgct 492

                                                                       
Query: 481 ttggaagaagacctggtgaagcttaaagatgagcttcaacaggaagcgcagtctatacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttggaagaagacctggtgaagcttaaagatgagcttcaacaggaagcgcagtctatacca 552

                                                                       
Query: 541 aatattactcatcctgatgttccgataggaggggaggattgttccactataataaagatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatattactcatcctgatgttccgataggaggggaggattgttccactataataaagatg 612

                                                                       
Query: 601 gttggcagcgctcccaaatttagctttcctgtcaaagatcatctccaactgggaaaggat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gttggcagcgctcccaaatttagctttcctgtcaaagatcatctccaactgggaaaggat 672

                                                                      
Query: 661 cttgatctctttgattttgatgctgctgcagaggttagtgggtcaaagttctactacct 719
           |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct: 673 cttgatctctttgactttgatgctactgcaga-gttagtgggtc-aagttctactacct 729


>gnl|LJGI|BP067530 similar to UniRef100_Q944K1 Cluster: At1g11870/F12F1_29; n=1;
            Arabidopsis thaliana|Rep: At1g11870/F12F1_29 -
            Arabidopsis thaliana (Mouse-ear cress), partial (6%)
          Length = 363

 Score =  176 bits (89), Expect = 3e-43
 Identities = 171/188 (90%), Gaps = 9/188 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1363 tctaaaggcaaccttgctccacc--acagtttgtcc-acaca-ttaaatgcaacagcatg 1418
            ||||||||||||| |||||||||   |||| ||||| ||||| |||||||||||||||||
Sbjct: 363  tctaaaggcaacc-tgctccacccaccagtctgtcctacacacttaaatgcaacagcatg 305

                                                                        
Query: 1419 tgcagt-accgc-ggatgattatatgcttacttgagaattaccaacaagaagatgggtct 1476
            |||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 304  tgcagtcaccgctggatgattatatgcttacttgagaattaccaagcagaagatgggtct 245

                                                                        
Query: 1477 gttcttatccctgagcccttga-ggcctttcatggggggccttaaca-ttatagctagaa 1534
            |||||||||||||||||||||| | |||||| ||||||||| | ||| ||||||||||||
Sbjct: 244  gttcttatccctgagcccttgacgccctttcctggggggccgtgacacttatagctagaa 185

                    
Query: 1535 aatcataa 1542
            ||||||||
Sbjct: 184  aatcataa 177