Miyakogusa Predicted Gene
- Lj1g3v1486310.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1486310.1 tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex subunit
SMARCC2 OS=Medicago truncatula GN=MTR_3g099000 PE=4
S,73.8,0,SWIRM,SWIRM domain; SANT,SANT domain;
Myb_DNA-binding,SANT/Myb domain; SANT SWI3, ADA2, N-CoR and
T,CUFF.27402.1
(1668 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW633102 similar to UniRef100_A7PHK4 Cluster: Chromosom... 912 0.0
gnl|LJGI|TC72184 weakly similar to UniRef100_A7PHK4 Cluster: Chr... 678 0.0
gnl|LJGI|TC72175 similar to UniRef100_A7PHK4 Cluster: Chromosome... 678 0.0
>gnl|LJGI|BW633102 similar to UniRef100_A7PHK4 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 460
Score = 912 bits (460), Expect = 0.0
Identities = 460/460 (100%)
Strand = Plus / Plus
Query: 592 gctaaggagttgaattgtgggatttgcggtgataagtgtggttttgaacattacagaagc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctaaggagttgaattgtgggatttgcggtgataagtgtggttttgaacattacagaagc 60
Query: 652 accaaggacaatttcactatttgtatgaaatgtttcaaaaatgggaattatggggagaaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accaaggacaatttcactatttgtatgaaatgtttcaaaaatgggaattatggggagaaa 120
Query: 712 aggtctgtggaggatttcatattaaacgagtcaaacgaaaatagtgtcaaacagagcact 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtctgtggaggatttcatattaaacgagtcaaacgaaaatagtgtcaaacagagcact 180
Query: 772 gtctggactgagggagaaactcttctccttttagaatctgttttgaagcatggagatgac 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtctggactgagggagaaactcttctccttttagaatctgttttgaagcatggagatgac 240
Query: 832 tgggaactcgttgctcaaagtgttcaaaccaagactaaacttgattgtatttcaaaactc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgggaactcgttgctcaaagtgttcaaaccaagactaaacttgattgtatttcaaaactc 300
Query: 892 attgagctgccttttggggagctcatgttaggctctgctcacagaaatgacaacattaat 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgagctgccttttggggagctcatgttaggctctgctcacagaaatgacaacattaat 360
Query: 952 attgctaatggcattgtcaataatgcaatacaagttcagtcatcttcttctgatcatcaa 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgctaatggcattgtcaataatgcaatacaagttcagtcatcttcttctgatcatcaa 420
Query: 1012 gaaacctcaaagacacagaatcaaactcctgagcttacaa 1051
||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaacctcaaagacacagaatcaaactcctgagcttacaa 460
>gnl|LJGI|TC72184 weakly similar to UniRef100_A7PHK4 Cluster: Chromosome chr17
scaffold_16, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_16, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 493
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1327 ggtttagagatggataggtccactcaggcagaaaaagatgacagaggcccaaaggatgac 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtttagagatggataggtccactcaggcagaaaaagatgacagaggcccaaaggatgac 60
Query: 1387 ataccattgcccctgcgcttaagagctggcattgcaactgctcttggagctgctgctgct 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataccattgcccctgcgcttaagagctggcattgcaactgctcttggagctgctgctgct 120
Query: 1447 agagctaagttaatggcggaccaggaagacagagagattgaacatttagtggcaactata 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agagctaagttaatggcggaccaggaagacagagagattgaacatttagtggcaactata 180
Query: 1507 attgaagcacagattggtaaattgcaacacaaggttaaacattttgacgagctggagttg 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgaagcacagattggtaaattgcaacacaaggttaaacattttgacgagctggagttg 240
Query: 1567 ttgatgaaaaaggaacatgctgaaatagaagagctaaaagattctatcttgactgagcgg 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgatgaaaaaggaacatgctgaaatagaagagctaaaagattctatcttgactgagcgg 300
Query: 1627 attgatgtgctgcagaagacatttagatctggaatcactaga 1668
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgatgtgctgcagaagacatttagatctggaatcactaga 342
>gnl|LJGI|TC72175 similar to UniRef100_A7PHK4 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 474
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1 atggaagtcctgaaagacccgaattcaaacccgggtcggaccgacgattccgaatctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 atggaagtcctgaaagacccgaattcaaacccgggtcggaccgacgattccgaatctgag 101
Query: 61 ctcgaactctacactattccaagctcttccaaatggttcgcgtgggacgagattcacgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctcgaactctacactattccaagctcttccaaatggttcgcgtgggacgagattcacgaa 161
Query: 121 acggagagaacagcgttgaaggagttcttcgatggaacctcgatttcaagaacgcccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 acggagagaacagcgttgaaggagttcttcgatggaacctcgatttcaagaacgcccaag 221
Query: 181 gtatacaaagagtacagggatttcgtgatcaacaagtacagggaagatccttcaaggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtatacaaagagtacagggatttcgtgatcaacaagtacagggaagatccttcaaggaag 281
Query: 241 ctcacgtttaccgaggtgcggaaatcgctggtgggcgatgtcacgctcctccgcaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctcacgtttaccgaggtgcggaaatcgctggtgggcgatgtcacgctcctccgcaaggtt 341
Query: 301 ttcctcttcttggagagctgcggtttgatcaactacggcgtt 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcctcttcttggagagctgcggtttgatcaactacggcgtt 383