Miyakogusa Predicted Gene
- Lj1g3v1454010.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1454010.1 tr|E5GBL8|E5GBL8_CUCME ATP-dependent clp protease
OS=Cucumis melo subsp. melo PE=3 SV=1,92.31,8e-19,seg,NULL; no
description,NULL,NODE_36035_length_440_cov_1652.984131.path1.1
(160 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69392 homologue to UniRef100_P35100 Cluster: ATP-depe... 317 1e-86
gnl|LJGI|TC67742 homologue to UniRef100_P35100 Cluster: ATP-depe... 176 3e-44
gnl|LJGI|TC68946 homologue to UniRef100_P35100 Cluster: ATP-depe... 133 3e-31
gnl|LJGI|BP056126 similar to UniRef100_P35100 Cluster: ATP-depen... 107 2e-23
gnl|LJGI|AV778863 similar to UniRef100_P35100 Cluster: ATP-depen... 94 3e-19
>gnl|LJGI|TC69392 homologue to UniRef100_P35100 Cluster: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor;
n=1; Pisum sativum|Rep: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor
- Pisum sativum (Garden pea), partial (13%)
Length = 704
Score = 317 bits (160), Expect = 1e-86
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 atgcgactcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atgcgactcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggc 276
Query: 61 gactctgtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gactctgtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagcagt 336
Query: 121 ggcaccccggagtcgttaccagaggctcttcctgtataaa 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggcaccccggagtcgttaccagaggctcttcctgtataaa 376
>gnl|LJGI|TC67742 homologue to UniRef100_P35100 Cluster: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor;
n=1; Pisum sativum|Rep: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor
- Pisum sativum (Garden pea), partial (15%)
Length = 764
Score = 176 bits (89), Expect = 3e-44
Identities = 113/121 (93%)
Strand = Plus / Plus
Query: 1 atgcgactcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggc 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 259 atgcgactcttggaggacagcatggcagagaagatgcttgctagagagattaaagagggc 318
Query: 61 gactctgtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagcagt 120
|||||||| ||||| || | ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 319 gactctgttatagttgatgctgattctgatggtaatgtgattgtgctcaatggtagcagt 378
Query: 121 g 121
|
Sbjct: 379 g 379
>gnl|LJGI|TC68946 homologue to UniRef100_P35100 Cluster: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor;
n=1; Pisum sativum|Rep: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor -
Pisum sativum (Garden pea), partial (55%)
Length = 1752
Score = 133 bits (67), Expect = 3e-31
Identities = 133/155 (85%)
Strand = Plus / Plus
Query: 1 atgcgactcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggc 60
||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct: 1375 atgcggctcttggaggacagcatggcagagaagatgcttgctggagagattaaagagggt 1434
Query: 61 gactctgtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagcagt 120
|||||||| ||| | || | ||||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 1435 gactctgttataattgatgctgattctgatggtaaggtgattgtgctcaatggtagtagt 1494
Query: 121 ggcaccccggagtcgttaccagaggctcttcctgt 155
|| | || || || | |||||||||||||||||
Sbjct: 1495 ggtgcaccagaatcactgccagaggctcttcctgt 1529
>gnl|LJGI|BP056126 similar to UniRef100_P35100 Cluster: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor;
n=1; Pisum sativum|Rep: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor
- Pisum sativum (Garden pea), partial (7%)
Length = 462
Score = 107 bits (54), Expect = 2e-23
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1 atgcgactcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggc 60
||||| |||||||||||| || |||| ||||||||||||||| ||||||| ||||||||
Sbjct: 405 atgcggctcttggaggaccgcctggccgagaagatgcttgctggagagattaaagagggt 346
Query: 61 gactctgtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagcagt 120
|||||||| ||| | || | ||||||||| ||||| ||||| |||||| ||||||| |||
Sbjct: 345 gactctgttataattgatgctgattctgatggtaaggtgattgtgctccatggtagtagt 286
Query: 121 gg 122
||
Sbjct: 285 gg 284
>gnl|LJGI|AV778863 similar to UniRef100_P35100 Cluster: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor;
n=1; Pisum sativum|Rep: ATP-dependent Clp protease
ATP-binding subunit clpC homolog, chloroplast precursor
- Pisum sativum (Garden pea), partial (4%)
Length = 441
Score = 93.7 bits (47), Expect = 3e-19
Identities = 96/111 (86%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 7 ctcttggaggacagcatggctgagaagatgcttgctagagagatcaaagagggcgactct 66
|||||||||||||||||| | ||||| || ||| |||||||||| |||||||||||||||
Sbjct: 441 ctcttggaggacagcatgcccgagaa-atactttctagagagattaaagagggcgactct 383
Query: 67 gtcatagtggacgttgattctgacggtaatgtgatcgtgctcaatggtagc 117
| ||||| || | ||||||||| ||||| ||||| |||||| ||||||||
Sbjct: 382 cttatagttgatgctgattctgatggtaaagtgattgtgctccatggtagc 332