Miyakogusa Predicted Gene
- Lj1g3v1364450.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1364450.1 tr|Q7XRB6|Q7XRB6_ORYSJ OSJNBa0006B20.1 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0006B20.1
PE,30.45,1e-18,RCC1/BLIP-II,Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II; no
descriptio,CUFF.27217.1
(1263 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS321221 similar to UniRef100_A7PKP2 Cluster: Chromosom... 1213 0.0
gnl|LJGI|TC80656 similar to UniRef100_A7PKP2 Cluster: Chromosome... 240 2e-62
gnl|LJGI|FS333475 similar to UniRef100_A7PKP2 Cluster: Chromosom... 107 2e-22
>gnl|LJGI|FS321221 similar to UniRef100_A7PKP2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 785
Score = 1213 bits (612), Expect = 0.0
Identities = 612/612 (100%)
Strand = Plus / Plus
Query: 1 atgtggcgccggagctatctccgattgtcggaactccaccgcggagcttcacgtttaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atgtggcgccggagctatctccgattgtcggaactccaccgcggagcttcacgtttaggg 233
Query: 61 ttagggtttccgacacgatcgtcctcgactcagccggggaagcggttcgcggcgctgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttagggtttccgacacgatcgtcctcgactcagccggggaagcggttcgcggcgctgtgg 293
Query: 121 ggcaacggtgatcacggcaggttgggcctcggcagcttggaatctcaatggaggcccgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggcaacggtgatcacggcaggttgggcctcggcagcttggaatctcaatggaggcccgcc 353
Query: 181 gtttgctccgccttcctcaaccactctcctcaagccattgcttgcggcggtgctcacacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtttgctccgccttcctcaaccactctcctcaagccattgcttgcggcggtgctcacacg 413
Query: 241 ctcttcttaacagacaatggatgcgtttacgctgctggtctcaatgattgtggacagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcttcttaacagacaatggatgcgtttacgctgctggtctcaatgattgtggacagctt 473
Query: 301 ggtacatcggagagtgtgaactactctctggagccacttcaagttttaggacatgagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggtacatcggagagtgtgaactactctctggagccacttcaagttttaggacatgagaag 533
Query: 361 aatattgtgcatatttcagctggttataatcattcttgtgcggtaacagtggatggagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aatattgtgcatatttcagctggttataatcattcttgtgcggtaacagtggatggagaa 593
Query: 421 ctatatatgtggggaaagaatactaatgggcagcttggactcggaaaaagagctccaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctatatatgtggggaaagaatactaatgggcagcttggactcggaaaaagagctccaaac 653
Query: 481 atagttcatttgccaactaaagtggaatacttggatggaatcaccattaaaatggctgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atagttcatttgccaactaaagtggaatacttggatggaatcaccattaaaatggctgct 713
Query: 541 ttgggtgctgagcactcattggttattagtgatggtggagaagccttcagttggggcatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttgggtgctgagcactcattggttattagtgatggtggagaagccttcagttggggcatg 773
Query: 601 ggagtgtctggt 612
||||||||||||
Sbjct: 774 ggagtgtctggt 785
>gnl|LJGI|TC80656 similar to UniRef100_A7PKP2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 437
Score = 240 bits (121), Expect = 2e-62
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 1135 ggacaactgggacatggatctgatgtggactacatatgtcctgcaagagtttgttttgga 1194
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ggacaactgggacatggatctgatgtggactacatatgtcctgccagagtttgttttgga 60
Query: 1195 gaagacgtgaatgcattgcaagtttcatgtggcttcaatcatacaggtgctatacttgaa 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagacgtgaatgcattgccagtttcatgtggcttcaatcatacaggtgctatacttgaa 120
Query: 1255 tatacatag 1263
|||||||||
Sbjct: 121 tatacatag 129
>gnl|LJGI|FS333475 similar to UniRef100_A7PKP2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 481
Score = 107 bits (54), Expect = 2e-22
Identities = 84/92 (91%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 152 gcagcttggaatctcaatggaggcccgccgtttg-ctccgccttcctcaaccactctcct 210
|||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |||
Sbjct: 107 gcagcttggattctcaatggaggcccgccgtttgccaccgccttccacaaccactcacct 166
Query: 211 ca---agccattgcttgcggcggtgctcacac 239
|| |||||||||||||||||||||||||||
Sbjct: 167 caagcagccattgcttgcggcggtgctcacac 198
Score = 79.8 bits (40), Expect = 4e-14
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 252 agacaatggatgcgtttacgctgctggtctcaatgattgtggacagcttggtacatcgga 311
|||||||| |||||||| |||||||||| ||||||||| |||||||||||||| ||| ||
Sbjct: 313 agacaatgtatgcgtttccgctgctggtgtcaatgattttggacagcttggtatatcaga 372
Query: 312 gagt 315
||||
Sbjct: 373 gagt 376