Miyakogusa Predicted Gene
- Lj1g3v1301650.4
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1301650.4 Non Chatacterized Hit- tr|H9WGG1|H9WGG1_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda GN=2,56.1,5e-18,zinc
finger,Zinc finger, CCCH-type; seg,NULL; no description,NULL; CCCH
zinc finger,NULL; ZF_C3H1,Zi,CUFF.27095.4
(3162 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO038408 weakly similar to UniRef100_Q9LIH5 Cluster: Ge... 1100 0.0
gnl|LJGI|TC82034 weakly similar to UniRef100_Q9LIH5 Cluster: Gen... 733 0.0
gnl|LJGI|TC67886 weakly similar to UniRef100_A7NSJ8 Cluster: Chr... 174 2e-42
gnl|LJGI|TC74168 similar to UniRef100_Q9LIH5 Cluster: Genomic DN... 107 4e-22
gnl|LJGI|BP065799 54 6e-06
>gnl|LJGI|GO038408 weakly similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome
3, TAC clone:K24M9; n=2; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 3, TAC clone:K24M9 - Arabidopsis
thaliana (Mouse-ear cress), partial (5%)
Length = 893
Score = 1100 bits (555), Expect = 0.0
Identities = 574/579 (99%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 166 gactatagagtttcggatgcaacaatggacttggatactgatagaagttacagcaagaac 225
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gactatggagtttgggatgcaacaatggacttggatactgatagaagttacagcaagaac 527
Query: 226 atgtctcctttgtttgaggaaaggagacaaaatagacgcagccaatctcccaaaagtggt 285
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 526 atgtctcctttgtttgaggaaaggagacaaaatagac-cagccaatctcccaaaagtggt 468
Query: 286 tggggccggtcagtcaggagaagtcggagcaggagccctcctcatggttttaggcgggat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tggggccggtcagtcaggagaagtcggagcaggagccctcctcatggttttaggcgggat 408
Query: 346 tcaggaatcaatgacagaattagaactagggttggaggatcttcacaaccatgcagagat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcaggaatcaatgacagaattagaactagggttggaggatcttcacaaccatgcagagat 348
Query: 406 tttgcttctggcacatgtagaagaggtagcctttgcaattttctccatcatgataatcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttgcttctggcacatgtagaagaggtagcctttgcaattttctccatcatgataatcaa 288
Query: 466 aatcctgaaaacagttgggaaagtaagcacagagaagatggagctcctagatattctgat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aatcctgaaaacagttgggaaagtaagcacagagaagatggagctcctagatattctgat 228
Query: 526 acccacgagagtagggaccattcttttaggagtggtagagctaatgaagcttgtattaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acccacgagagtagggaccattcttttaggagtggtagagctaatgaagcttgtattaat 168
Query: 586 tttgcgaaaggcaggtgtagacagggatcatcatgcaagtttgtgcatcataacaattct 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tttgcgaaaggcaggtgtagacagggatcatcatgcaagtttgtgcatcataacaattct 108
Query: 646 gatgggtacggtaaagtttctggggatgaattaactagagaaaaggaaattgataaaagg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 107 gatgggtacggtaaagtttctggggatgaattaactagagaaaaggaaattgatagaagg 48
Query: 706 cgcggagatagttcttttgagcagggtggcaggcatggg 744
||| |||||||||||||||||||||||||||||||||||
Sbjct: 47 cgcagagatagttcttttgagcagggtggcaggcatggg 9
Score = 202 bits (102), Expect = 1e-50
Identities = 120/126 (95%)
Strand = Plus / Minus
Query: 166 gactatagagtttcggatgcaacaatggacttggatactgatagaagttacagcaagaac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gactatagagtttcggatgcaacaatggacttggatactgatagaagttacagcaagaac 695
Query: 226 atgtctcctttgtttgaggaaaggagacaaaatagacgcagccaatctcccaaaagtggt 285
|||||||||||||| |||||||||| |||||| |||||||| ||||| ||||||| ||||
Sbjct: 694 atgtctcctttgttggaggaaaggaaacaaaagagacgcagtcaatcacccaaaattggt 635
Query: 286 tggggc 291
||||||
Sbjct: 634 tggggc 629
Score = 129 bits (65), Expect = 1e-28
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 98 ctgcagatgttgccggcagcaatagctcgaaatggtcttattcagaaggaaatgatgaat 157
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 893 ctgcagatgttgccggcagcaatagctcgaaatggtcttattcagaagtaaatgatgaat 834
Query: 158 taaaacctg 166
|||||||||
Sbjct: 833 taaaacctg 825
>gnl|LJGI|TC82034 weakly similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome
3, TAC clone:K24M9; n=2; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 3, TAC clone:K24M9 - Arabidopsis
thaliana (Mouse-ear cress), partial (13%)
Length = 700
Score = 733 bits (370), Expect = 0.0
Identities = 372/373 (99%)
Strand = Plus / Plus
Query: 2790 tgctgagcgaagacgaaattctcgagatgctcataagaataccaaagaggatggtccttt 2849
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgagcgaagacganattctcgagatgctcataagaataccaaagaggatggtccttt 60
Query: 2850 ggacaacatggaccaacctggtggacctgatgaggccaagaaaacaaaggatgtgaagga 2909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacaacatggaccaacctggtggacctgatgaggccaagaaaacaaaggatgtgaagga 120
Query: 2910 gcttcgtgcctttaaattttcattggccgacttggtcaaggagcttctgaagccagcatg 2969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttcgtgcctttaaattttcattggccgacttggtcaaggagcttctgaagccagcatg 180
Query: 2970 gaaagaaggtcaagtcaataaagaagattttaaaacaattgtgaagaaagttgttgaaaa 3029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaagaaggtcaagtcaataaagaagattttaaaacaattgtgaagaaagttgttgaaaa 240
Query: 3030 agtatctggtactatgcaggggtcccaaattcctcagacaaaagagaaaattgatcaata 3089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtatctggtactatgcaggggtcccaaattcctcagacaaaagagaaaattgatcaata 300
Query: 3090 tttgtcagtttcaagaacaaagcttaccaaacttgtacaggcatatgtggaaaaggttca 3149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgtcagtttcaagaacaaagcttaccaaacttgtacaggcatatgtggaaaaggttca 360
Query: 3150 gaaggcttagtac 3162
|||||||||||||
Sbjct: 361 gaaggcttagtac 373
>gnl|LJGI|TC67886 weakly similar to UniRef100_A7NSJ8 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (16%)
Length = 851
Score = 174 bits (88), Expect = 2e-42
Identities = 262/320 (81%)
Strand = Plus / Plus
Query: 2841 tggtcctttggacaacatggaccaacctggtggacctgatgaggccaagaaaacaaagga 2900
|||||||||||| | |||||||||| |||||| ||||||||| |||||| || |||||
Sbjct: 262 tggtcctttggaaagcatggaccaaagtggtgggcctgatgagatcaagaacaccaagga 321
Query: 2901 tgtgaaggagcttcgtgcctttaaattttcattggccgacttggtcaaggagcttctgaa 2960
|||||||| | | ||||| |||||| |||||||| || || | ||||||||||| ||
Sbjct: 322 tgtgaaggggatgcgtgcatttaaaggttcattggtggagttcattaaggagcttctaaa 381
Query: 2961 gccagcatggaaagaaggtcaagtcaataaagaagattttaaaacaattgtgaagaaagt 3020
|| ||||||||||||| ||| ||| ||||| |||| |||| ||| |||||||||||
Sbjct: 382 acccacatggaaagaaggccaaatcaccaaagacgattataaagaaatagtgaagaaagt 441
Query: 3021 tgttgaaaaagtatctggtactatgcaggggtcccaaattcctcagacaaaagagaaaat 3080
| ||| |||||||||| ||| ||||| || | || ||||||| ||| ||||||||||
Sbjct: 442 tactgataaagtatctgttacagtgcagcgggcacatgttcctcaaacacaagagaaaat 501
Query: 3081 tgatcaatatttgtcagtttcaagaacaaagcttaccaaacttgtacaggcatatgtgga 3140
||| | ||||| |||||||| | | | ||||||| ||||||| ||||||||||||||||
Sbjct: 502 tgaccgctatttatcagtttcgaaacccaagcttaacaaacttatacaggcatatgtgga 561
Query: 3141 aaaggttcagaaggcttagt 3160
||||||||||||||| ||||
Sbjct: 562 aaaggttcagaaggcgtagt 581
>gnl|LJGI|TC74168 similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome 3, TAC
clone:K24M9; n=2; Arabidopsis thaliana|Rep: Genomic DNA,
chromosome 3, TAC clone:K24M9 - Arabidopsis thaliana
(Mouse-ear cress), partial (12%)
Length = 511
Score = 107 bits (54), Expect = 4e-22
Identities = 199/246 (80%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 2886 caagaaaacaaaggatgtgaaggagcttcgtgcctttaaattttcattggccgacttggt 2945
||||||||||||||||||||||| | | ||||| |||||| |||||||| || || |
Sbjct: 9 caagaaaacaaaggatgtgaaggggatgcgtgcatttaaaggttcattggtggagttcat 68
Query: 2946 caaggagcttctgaagccagcatggaaagaaggtcaagtcaat-aaagaagattttaaaa 3004
||||||||||| || ||| ||||||||||||| ||| || | ||||| |||| ||||
Sbjct: 69 taaggagcttctaaaaccaacatggaaagaaggccaaatccaccaaagacgattataaag 128
Query: 3005 caattgtgaagaaagttgttgaaaaagtatctggtactatgcaggggtcccaaattcctc 3064
||| |||||||||||| ||| |||||||||| ||| ||||| || | || ||||||
Sbjct: 129 aaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcacatgttcctc 188
Query: 3065 agacaaaagagaaaattgatcaatatttgtcagtttcaagaacaaagcttaccaaacttg 3124
| ||| ||||||||||||| | ||||| |||||||| | | ||||||||| |||||||
Sbjct: 189 aaacacaagagaaaattgaccgctatttatcagtttcgaaaccaaagcttaacaaactta 248
Query: 3125 tacagg 3130
||||||
Sbjct: 249 tacagg 254
>gnl|LJGI|BP065799
Length = 467
Score = 54.0 bits (27), Expect = 6e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3130 gcatatgtggaaaaggttcagaaggcttagt 3160
|||||||||||||||||||||||||| ||||
Sbjct: 158 gcatatgtggaaaaggttcagaaggcgtagt 128