Miyakogusa Predicted Gene
- Lj1g3v1218950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1218950.1 Non Chatacterized Hit- tr|D7M0A0|D7M0A0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,32.2,0.00003,seg,NULL; no description,Galactose oxidase,
beta-propeller; Kelch_1,Kelch repeat type 1; F-box,F-box,CUFF.27033.1
(1082 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63812 weakly similar to UniRef100_Q9SJ04 Cluster: F-b... 1473 0.0
>gnl|LJGI|TC63812 weakly similar to UniRef100_Q9SJ04 Cluster: F-box/kelch-repeat
protein SKIP6; n=1; Arabidopsis thaliana|Rep:
F-box/kelch-repeat protein SKIP6 - Arabidopsis thaliana
(Mouse-ear cress), partial (61%)
Length = 1526
Score = 1473 bits (743), Expect = 0.0
Identities = 743/743 (100%)
Strand = Plus / Plus
Query: 340 actatctacatcctcggcggctccatcaacgacgtccccacacctcacgtctggcttctc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actatctacatcctcggcggctccatcaacgacgtccccacacctcacgtctggcttctc 433
Query: 400 gactgccgcttccaccgctggctccccggcccctccatgcgcgtcgcgcgtgagttcgcc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gactgccgcttccaccgctggctccccggcccctccatgcgcgtcgcgcgtgagttcgcc 493
Query: 460 gctgctggcgtcatcgacggcaagatctacgtcatcggcgggtgtatcgccgacaactgg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gctgctggcgtcatcgacggcaagatctacgtcatcggcgggtgtatcgccgacaactgg 553
Query: 520 acccgctccgctcactgggcggaaaccctcgaccctgccaccgggcggtgggagcgcgtc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acccgctccgctcactgggcggaaaccctcgaccctgccaccgggcggtgggagcgcgtc 613
Query: 580 ccgagcccgcctgagatccaggagaagtggatgcacgctagcgcggttgtcgggggtaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccgagcccgcctgagatccaggagaagtggatgcacgctagcgcggttgtcgggggtaag 673
Query: 640 gtttatgccatggctgatcgcggcggcgtcgcgttcgacccgcggagcggcgcgtgggag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtttatgccatggctgatcgcggcggcgtcgcgttcgacccgcggagcggcgcgtgggag 733
Query: 700 agcgtgagtggcgagcttgaccttgggtggcgggggagggcgtgtgtggtggatgaggtg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agcgtgagtggcgagcttgaccttgggtggcgggggagggcgtgtgtggtggatgaggtg 793
Query: 760 ctgtactgctatgatttcttggggaagatcaaggggtttgatgtgaagcgagggtgttgg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctgtactgctatgatttcttggggaagatcaaggggtttgatgtgaagcgagggtgttgg 853
Query: 820 agggagctaaaggggttgaacagtttgccgatttttctgtgtggagcaaccatggctgat 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agggagctaaaggggttgaacagtttgccgatttttctgtgtggagcaaccatggctgat 913
Query: 880 gttggtggaaaattggttgtggtttgggagtaccaagcggtcaagggtggtattggcaaa 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gttggtggaaaattggttgtggtttgggagtaccaagcggtcaagggtggtattggcaaa 973
Query: 940 gaaatagatatttggtgtgctgagattgaggtgaacaagaagcagaatggggaattgtgg 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaaatagatatttggtgtgctgagattgaggtgaacaagaagcagaatggggaattgtgg 1033
Query: 1000 ggtggtgtttgctggtttggcaaggttctttctgttccaaaagggtcctccattgttcat 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ggtggtgtttgctggtttggcaaggttctttctgttccaaaagggtcctccattgttcat 1093
Query: 1060 tgttcttctgtagctgtgtgaga 1082
|||||||||||||||||||||||
Sbjct: 1094 tgttcttctgtagctgtgtgaga 1116
Score = 543 bits (274), Expect = e-154
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 1 atggcggattccggtgaaccaaaggaggaggagaagaaccagaaccagaacctgatcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 atggcggattccggtgaaccaaaggaggaggagaagaaccagaaccagaacctgatcccg 94
Query: 61 aaccttccagatgacgtagcagtgaattgcttggctcgggtccctcgttcggaccacccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aaccttccagatgacgtagcagtgaattgcttggctcgggtccctcgttcggaccacccg 154
Query: 121 aacctctccctcgtttccaaaccaatccacttcctcctcacttcgccactcttcttcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aacctctccctcgtttccaaaccaatccacttcctcctcacttcgccactcttcttcaac 214
Query: 181 gcgcgttcccttctcaactgcacccaacaccacctttacctcacgctccgcacacgcgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gcgcgttcccttctcaactgcacccaacaccacctttacctcacgctccgcacacgcgcc 274
Query: 241 tccgcgctccaaatcttcacgctccaccgcaaaa 274
||||||||||||||||||||||||||||||||||
Sbjct: 275 tccgcgctccaaatcttcacgctccaccgcaaaa 308