Miyakogusa Predicted Gene
- Lj1g3v1181990.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1181990.1 Non Chatacterized Hit- tr|J3N552|J3N552_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,47.89,0.000000000000006,SUBFAMILY NOT NAMED,NULL;
NONSENSE-MEDIATED MRNA DECAY PROTEIN 3,NULL; seg,NULL;
NMD3,NMD3,CUFF.26918.1
(1571 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76638 similar to UniRef100_A7PYY1 Cluster: Chromosome... 1104 0.0
gnl|LJGI|TC57994 similar to UniRef100_A7PYY1 Cluster: Chromosome... 474 e-133
gnl|LJGI|TC72609 similar to UniRef100_A7PYY1 Cluster: Chromosome... 361 9e-99
gnl|LJGI|TC58783 similar to UniRef100_A7PYY1 Cluster: Chromosome... 361 9e-99
gnl|LJGI|AV410246 similar to UniRef100_A7PYY1 Cluster: Chromosom... 337 1e-91
gnl|LJGI|DC598548 similar to UniRef100_A7PYY1 Cluster: Chromosom... 291 7e-78
>gnl|LJGI|TC76638 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 1290
Score = 1104 bits (557), Expect = 0.0
Identities = 897/1007 (89%), Gaps = 15/1007 (1%)
Strand = Plus / Plus
Query: 571 aagcacggtgttgcggccacggctataagaatcaaacaaatggatgagggcattgatttc 630
|||||||||| ||| |||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct: 84 aagcacggtgctgctgccagtgctataaggatcaaacagatggatgagggcattgacttc 143
Query: 631 tatttctccaacaaaagccatggtaacaagtttgtgcaatttatacagaaagtagcccct 690
|||||||| || | |||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct: 144 tatttctctaatagaagccatggtgtcaagtttgtggaatttatagggaaagtagctcct 203
Query: 691 ataaggagcaatggtgataataggcagcttgtttctcatgatacaaagagcaacacctac 750
|||| |||| | | ||||| ||||||||||||||||||||||||||| || |||
Sbjct: 204 ataaagagccgtagagataa---gcagcttgtttctcatgatacaaagagtaatgaatac 260
Query: 751 aactacagatatacttattctgttgaaattagccccatttgccgtgaggatttaatatgt 810
||||||| | |||| | |||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 261 aactacaaacatacattttctgttgaaatcagccccatttgccgtgaggatttaatctgt 320
Query: 811 ctgcctcatcatgttgctctaagtttgggaaatattggcccattggtgatttgcactaag 870
||||||| | | ||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct: 321 ctgcctcctaaagttgctctaagtttgggaaatcttggcccaattgtgatttgcactaag 380
Query: 871 gttaccaacagcattgttctgcttgatccattcaccttgagacactgttccttagatgcc 930
|||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||
Sbjct: 381 gttaccaacagcattgctttgcttgatccattcaccttgaggtactgtttcttagatgct 440
Query: 931 aatcagtattggggagcatccttcaagtctttacttactagtagacagctagtggagtat 990
||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 441 gatcagtattggaggtcatccttcaagtctttacttactagcagacagttagtggagtat 500
Query: 991 gtggtcctggatgtggaggaggttgtgccatctgaggtggttactgttggtggcacgaaa 1050
| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 501 atagtcctggatgt---ggaggttgtgtcatctga---ggttactgttggtggcacgaaa 554
Query: 1051 tatgccttagctgttgttgaagtggctcgtgtgtcagattttggaaagaatgacacaata 1110
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tatgttttagctgatgcccaagtggctcgtgtgtcagattttggaaagaatgacacaata 614
Query: 1111 ttctccatcaagactcatcttggccatcttttaaatcctggtgattatgctcttggttat 1170
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttccatcaagactcatcttggccatcttttaaatcctggtgattatgctcttggttat 674
Query: 1171 gatctatatggggctaattgtaacaacattgaattggacatatacaaagg---tgacctt 1227
|| ||||||||||||||| |||| ||||||||||||||| ||||||||| | ||||
Sbjct: 675 gacctatatggggctaataataacgacattgaattggacaaatacaaaggacttatcctt 734
Query: 1228 cctcatgcaattttagtaaagaagagttatgaagagaagcgcttgaagaaacgtgggaag 1287
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 735 cctgatgcaattttagtaaagaagagttatgaagagaagcgccagaagaaacgtgggaag 794
Query: 1288 cctcgttcatggaagcttaaatcactcaacatggaggttgatgataa---gggtagaatt 1344
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 795 gctcgttcatggaagcttaaatcactcaacatggaggttgatgataaggtggctagagct 854
Query: 1345 gacccagacaagatgaactcagaatatgaacaattcttaaatgatctggaagaaaaccct 1404
||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 855 gacccagacaagatgcactcagaatacgaacaattcttaaaggatctggaagaaaacccc 914
Query: 1405 gacctgaggttcaacctatcactgtaccaaaatatagagttccaaccatcagagatggca 1464
||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||| |||
Sbjct: 915 gacctgaggttcaacatatcactgtaccgaaataaagagtaccagccatcagagatagca 974
Query: 1465 tctgtgactgatggggaagagctaccttctgttccattggaggagttattggctgatctt 1524
|| |||||||||||||||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 975 tcagtgactgatggggaagagcttccttctgttcccctggaggagctactggctgatctt 1034
Query: 1525 gagctgggcgaggatgaagatgaggacgacttcatgatggaataaac 1571
|||||||| ||||| ||||||||||| ||| |||||||||||||||
Sbjct: 1035 gagctgggtgaggacgaagatgaggaggacgacatgatggaataaac 1081
>gnl|LJGI|TC57994 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 841
Score = 474 bits (239), Expect = e-133
Identities = 531/627 (84%), Gaps = 6/627 (0%)
Strand = Plus / Plus
Query: 68 ttttgtgctgcatatgtggaattccgatgcaaccgaacgctgcaaacatgtgtgtcaagt 127
||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 221 ttttgtgttgcaaatgtggaattccgatgcaaccgaacgctgccaacatgtgtgtcaagt 280
Query: 128 gtttaagctcccaagaggacatcacagaggggctccaaaagcaaatcaaaatctatcact 187
|| | |||| ||| |||||||||||||||||||| |||| || || ||||
Sbjct: 281 gtctgcgctctgaagtggacatcacagaggggctcctcaagcggctcgtgctcgtgcact 340
Query: 188 gccctgagtgcgagagttacttgcagcaacaaccaaaaacttggatcaaatatcttcgtt 247
|||| ||||| |||||||||||||||| | | | ||||||||||| |||| |
Sbjct: 341 gccccgagtgtgagagttacttgcagccgc---cgaggacttggatcaag---cttcaat 394
Query: 248 tggaatctgatgagctactcaaattctgcttgaatatgttgaagaagaaattgagtacca 307
||||||| | ||||| |||| |||||| ||||| | |||| ||||||| |||| |||
Sbjct: 395 tggaatccaaggagctgctcacattctgtttgaagaagttgcagaagaatatgagctcca 454
Query: 308 acaaagtgagggtggtggatgctcgtttcatctggactgagcctcactccaagaggatta 367
|||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||
Sbjct: 455 gcaaagtgaggatggtgcatgctgagtttatctggactgagcctcattccaagaggatta 514
Query: 368 aggtcaatgtcaaggttcagaaagaggttctgaatggggtgattcttgaacagtcttacc 427
|||| ||||||||||||||||| |||||| ||||||||| |||||| ||||||||||| |
Sbjct: 515 aggttaatgtcaaggttcagaaggaggttttgaatggggcgattctcgaacagtcttatc 574
Query: 428 tcgtcgagtatgttcagctggaacacttgtgtgactcttgcaccaggttggcggctaacc 487
| || ||||||||||||| |||||| ||||||| ||||| ||| | ||||||||||||
Sbjct: 575 tggttgagtatgttcagcaggaacatctgtgtgaatcttgttccaaggtggcggctaacc 634
Query: 488 ctgatcagtgggttgctgttgtgcaactcaggcaacatgtttcgcataggcgaaccttct 547
| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 635 cggatcagtgggttgcggctgtgcaactcaggcaacatgtttctcataggcgaaccttct 694
Query: 548 tttatttggagcagttgattctcaagcacggtgttgcggccacggctataagaatcaaac 607
|||||||||||||| ||||||| |||||||||| ||| |||| |||||||| |||||||
Sbjct: 695 tttatttggagcagctgattctgaagcacggtgctgctgccagtgctataaggatcaaac 754
Query: 608 aaatggatgagggcattgatttctatttctccaacaaaagccatggtaacaagtttgtgc 667
| ||||||||||||||||| ||||||||||| || | |||||||||| ||||||||||
Sbjct: 755 agatggatgagggcattgacttctatttctctaatagaagccatggtgtcaagtttgtgg 814
Query: 668 aatttatacagaaagtagcccctataa 694
|||||||| ||||||||| |||||||
Sbjct: 815 aatttatagggaaagtagctcctataa 841
>gnl|LJGI|TC72609 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 963
Score = 361 bits (182), Expect = 9e-99
Identities = 197/202 (97%)
Strand = Plus / Minus
Query: 1370 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 823
Query: 1430 accaaaatatagagttccaaccatcagagatggcatctgtgactgatggggaagagctac 1489
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 accaaaatatagagttccagccatcagagatggcatctgtgactgatggggaagagctac 763
Query: 1490 cttctgttccattggaggagttattggctgatcttgagctgggcgaggatgaagatgagg 1549
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 762 cttctgttccactggaggagttactggctgatcttgagctgggtgaggatgaagatgagg 703
Query: 1550 acgacttcatgatggaataaac 1571
| ||||||||||||||||||||
Sbjct: 702 aggacttcatgatggaataaac 681
>gnl|LJGI|TC58783 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 790
Score = 361 bits (182), Expect = 9e-99
Identities = 197/202 (97%)
Strand = Plus / Plus
Query: 1370 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 atgaacaattcttaaatgatctggaagaaaaccctgacctgaggttcaacctatcactgt 116
Query: 1430 accaaaatatagagttccaaccatcagagatggcatctgtgactgatggggaagagctac 1489
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 accaaaatatagagttccagccatcagagatggcatctgtgactgatggggaagagctac 176
Query: 1490 cttctgttccattggaggagttattggctgatcttgagctgggcgaggatgaagatgagg 1549
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 177 cttctgttccactggaggagttactggctgatcttgagctgggtgaggatgaagatgagg 236
Query: 1550 acgacttcatgatggaataaac 1571
| ||||||||||||||||||||
Sbjct: 237 aggacttcatgatggaataaac 258
>gnl|LJGI|AV410246 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 426
Score = 337 bits (170), Expect = 1e-91
Identities = 185/190 (97%)
Strand = Plus / Plus
Query: 1382 taaatgatctggaagaaaaccctgacctgaggttcaacctatcactgtaccaaaatatag 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaatgatctggaagaaaaccctgacctgaggttcaacctatcactgtaccaaaatatag 60
Query: 1442 agttccaaccatcagagatggcatctgtgactgatggggaagagctaccttctgttccat 1501
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttccagccatcagagatggcatctgtgactgatggggaagagctaccttctgttccac 120
Query: 1502 tggaggagttattggctgatcttgagctgggcgaggatgaagatgaggacgacttcatga 1561
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 121 tggaggagttactggctgatcttgagctgggtgaggatgaagatgaggaggacttcatga 180
Query: 1562 tggaataaac 1571
||||||||||
Sbjct: 181 tggaataaac 190
>gnl|LJGI|DC598548 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 499
Score = 291 bits (147), Expect = 7e-78
Identities = 266/305 (87%), Gaps = 3/305 (0%)
Strand = Plus / Plus
Query: 1 atgttaggttcattgggcatggagattgaagctggtatgttctcggttccccaaacaatc 60
||||||||||||| | |||||||||||||||||| |||||| | |||| ||||||||||
Sbjct: 198 atgttaggttcatcagccatggagattgaagctggaatgttcactgttcaccaaacaatc 257
Query: 61 tgcaatattttgtgctgcatatgtggaattccgatgcaaccgaacgctgcaaacatgtgt 120
||| | ||||||| ||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 258 agcagtgttttgtgttgcatatgtggaattcccatgcaacccaacgctgccaacatgtgt 317
Query: 121 gtcaagtgtttaagctcccaagaggacatcacagaggggctccaaaagcaaatcaaaatc 180
|||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||
Sbjct: 318 gtcaagtgtttatcctcccaagaggacatcacagaggggctcctgaagcgtattaaaatc 377
Query: 181 tatcactgccctgagtgcgagagttacttgcagcaacaaccaaaaacttggatcaaatat 240
| ||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||
Sbjct: 378 tttcactgccctgagtgtgatagttacttgcagcaaca---gaaaacttggatcaaacat 434
Query: 241 cttcgtttggaatctgatgagctactcaaattctgcttgaatatgttgaagaagaaattg 300
|||| |||||||| | ||||| ||||||||||||||||| ||||| ||||||| |||
Sbjct: 435 cttcaattggaatccaaggagctgctcaaattctgcttgaacatgttccagaagaagttg 494
Query: 301 agtac 305
|||||
Sbjct: 495 agtac 499