Miyakogusa Predicted Gene

Lj1g3v1181980.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1181980.1 Non Chatacterized Hit- tr|Q9ZQ09|Q9ZQ09_ARATH
Putative Ty3-gypsy-like retroelement pol polyprotein
O,30.49,3,seg,NULL,CUFF.26917.1
         (373 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70676 weakly similar to UniRef100_Q9KEP5 Cluster: BH0...   149   1e-35
gnl|LJGI|DC598146                                                     109   1e-23

>gnl|LJGI|TC70676 weakly similar to UniRef100_Q9KEP5 Cluster: BH0807 protein; n=1;
           Bacillus halodurans|Rep: BH0807 protein - Bacillus
           halodurans, partial (5%)
          Length = 580

 Score =  149 bits (75), Expect = 1e-35
 Identities = 90/95 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaagatcaaccaatgaccaaagcagacctgaaggatgttaccgcggctcttaccgcg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atggaagatcaaccattgaccaaagcagacctgaaggatgttaccgcggctcttaccgcg 255

                                              
Query: 61  gccctaactgctattacgcaacatatgacacaaca 95
           |||||||||||||| || ||||| |||||| ||||
Sbjct: 254 gccctaactgctatgacacaacagatgacagaaca 220


>gnl|LJGI|DC598146 
          Length = 555

 Score =  109 bits (55), Expect = 1e-23
 Identities = 80/87 (91%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                       
Query: 287 caacctctaaaaccaccgaaactc-cacacccccaacctgctactccaaaccttatcaat 345
           |||||||||||||||||||||    |||||||||||||||||||  | ||||||||||||
Sbjct: 1   caacctctaaaaccaccgaaaggggcacacccccaacctgctacatccaaccttatcaat 60

                                      
Query: 346 ccttaccccaacatatcaccgactgca 372
           |||||||||||||||||||||||||||
Sbjct: 61  ccttaccccaacatatcaccgactgca 87