Miyakogusa Predicted Gene

Lj1g3v1169750.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1169750.1 Non Chatacterized Hit- tr|K4BFH7|K4BFH7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,35.48,2e-19,no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL; RING FINGER
PROTEIN 6/12/38,NULL; RING/U-b,CUFF.26897.1
         (489 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV770943 similar to UniRef100_A7QFN6 Cluster: Chromosom...   141   5e-33
gnl|LJGI|GO025569 weakly similar to UniRef100_A7QBB7 Cluster: Ch...    74   9e-13

>gnl|LJGI|AV770943 similar to UniRef100_A7QFN6 Cluster: Chromosome chr8 scaffold_88,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_88, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 481

 Score =  141 bits (71), Expect = 5e-33
 Identities = 108/119 (90%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 371 tggatggagtgaaagttagagtgctaccaaaatgtaaccatgtgttccatgtaaagtgca 430
           ||||||||| |||||||||||| || || |||||||||||||  |||||||| |||||||
Sbjct: 480 tggatggagagaaagttagagttctgcctaaatgtaaccatggattccatgtgaagtgca 421

                                                                      
Query: 431 tagatgtatggctgctctcacactcttcttgtcctaactgcagagaagtcattgcttga 489
           |||||  |||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 420 tagataaatggctgctctcacactcttcttgtcctaactgcaga-cagtcattgcttga 363


>gnl|LJGI|GO025569 weakly similar to UniRef100_A7QBB7 Cluster: Chromosome chr4
           scaffold_73, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_73, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (9%)
          Length = 556

 Score = 73.8 bits (37), Expect = 9e-13
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggaatctctcactggtagctcagattttgacaccatcatggtgtttatcttggcaggttt 143
           |||||||||||| ||| ||||| |||||||||||| |||| ||||||||||||||| |||
Sbjct: 439 ggaatctctcaccggtggctcaaattttgacaccaacatgctgtttatcttggcagcttt 498

            
Query: 144 g 144
           |
Sbjct: 499 g 499