Miyakogusa Predicted Gene
- Lj1g3v1073610.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1073610.2 tr|Q94JR0|Q94JR0_ARATH At1g32790 OS=Arabidopsis
thaliana PE=2 SV=1,42.86,0.000000000007,RRM,RNA recognition motif
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nu,CUFF.26724.2
(279 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-bindin... 545 e-155
gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome... 537 e-152
gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790;... 264 3e-70
gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome... 60 7e-09
>gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-binding-like protein; n=1;
Arabidopsis thaliana|Rep: RNA-binding-like protein -
Arabidopsis thaliana (Mouse-ear cress), partial (57%)
Length = 1421
Score = 545 bits (275), Expect = e-155
Identities = 278/279 (99%)
Strand = Plus / Plus
Query: 1 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1033
Query: 61 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1093
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattactgct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1094 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1153
Query: 181 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 1213
Query: 241 ccagtccggtctcgctctcctcgttctccaatgcactga 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 ccagtccggtctcgctctcctcgttctccaatgcactga 1252
>gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 1558
Score = 537 bits (271), Expect = e-152
Identities = 277/279 (99%)
Strand = Plus / Plus
Query: 1 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 atgtgctcaaggacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1139
Query: 61 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1199
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattactgct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1200 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1259
Query: 181 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 1319
Query: 241 ccagtccggtctcgctctcctcgttctccaatgcactga 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 ccagtccggtctcgctctcctcgttctccaatgcactga 1358
>gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790; n=1; Arabidopsis
thaliana|Rep: At1g32790 - Arabidopsis thaliana
(Mouse-ear cress), partial (25%)
Length = 670
Score = 264 bits (133), Expect = 3e-70
Identities = 148/153 (96%)
Strand = Plus / Plus
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattactgct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 60
Query: 181 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 61 ctgagttgcagtggtgtgatattgggttcactgcctataagggtaagtccatcaaaaaca 120
Query: 241 ccagtccggtctcgctctcctcgttctccaatg 273
||||| ||||||||||||||||| |||||||||
Sbjct: 121 ccagtacggtctcgctctcctcgctctccaatg 153
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 249 gtctcgctctcctcgttctccaatgcactga 279
|||||||| ||||||||||||||||||||||
Sbjct: 153 gtctcgctatcctcgttctccaatgcactga 183
>gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 745
Score = 60.0 bits (30), Expect = 7e-09
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 25 acaaatattgacaagaagcttactcaatctgatgtcaaaaacttctttgaatctatttgt 84
||||||||||| || ||| || ||||| |||| || || || || |||||||| ||||
Sbjct: 124 acaaatattgataaaaagatttctcaagctgaagtgaagaatttttttgaatcagcttgt 183
Query: 85 ggagaggttcaacggttgaggcttcttggggatcacaatcattcaactcgaattgctttt 144
|| |||||| ||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 184 ggtgaggttacacgcttgaggcttttgggggatcatgtgcattcaactcgaattgctttt 243
Query: 145 gt 146
||
Sbjct: 244 gt 245