Miyakogusa Predicted Gene
- Lj1g3v1073610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1073610.1 Non Chatacterized Hit- tr|A5CA87|A5CA87_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.43,0.000000000002,seg,NULL; RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.26724.1
(303 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-bindin... 509 e-144
gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome... 502 e-142
gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790;... 363 e-100
gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome... 60 8e-09
>gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-binding-like protein; n=1;
Arabidopsis thaliana|Rep: RNA-binding-like protein -
Arabidopsis thaliana (Mouse-ear cress), partial (57%)
Length = 1421
Score = 509 bits (257), Expect = e-144
Identities = 269/273 (98%)
Strand = Plus / Plus
Query: 1 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1033
Query: 61 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1093
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1153
Query: 181 ctgagttgcagtggtgtgatattgggttcactgcctataagggtaagtccatcaaaaaca 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 1154 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 1213
Query: 241 ccagtacggtctcgctctcctcgctctccaatg 273
||||| ||||||||||||||||| |||||||||
Sbjct: 1214 ccagtccggtctcgctctcctcgttctccaatg 1246
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 273 gtctcgctatcctcgttctccaatgcactga 303
|||||||| ||||||||||||||||||||||
Sbjct: 1222 gtctcgctctcctcgttctccaatgcactga 1252
>gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 1558
Score = 502 bits (253), Expect = e-142
Identities = 268/273 (98%)
Strand = Plus / Plus
Query: 1 atgtgctcaagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 atgtgctcaaggacaatttactgcacaaatattgacaagaagcttactcaatctgatgtc 1139
Query: 61 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aaaaacttctttgaatctatttgtggagaggttcaacggttgaggcttcttggggatcac 1199
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 1259
Query: 181 ctgagttgcagtggtgtgatattgggttcactgcctataagggtaagtccatcaaaaaca 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 1260 ctgagttgcagtggtgtgatattgggttcgctgcctataagggtaagtccatcaaagaca 1319
Query: 241 ccagtacggtctcgctctcctcgctctccaatg 273
||||| ||||||||||||||||| |||||||||
Sbjct: 1320 ccagtccggtctcgctctcctcgttctccaatg 1352
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 273 gtctcgctatcctcgttctccaatgcactga 303
|||||||| ||||||||||||||||||||||
Sbjct: 1328 gtctcgctctcctcgttctccaatgcactga 1358
>gnl|LJGI|TC81539 similar to UniRef100_Q94JR0 Cluster: At1g32790; n=1; Arabidopsis
thaliana|Rep: At1g32790 - Arabidopsis thaliana
(Mouse-ear cress), partial (25%)
Length = 670
Score = 363 bits (183), Expect = e-100
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 121 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatcattcaactcgaattgcttttgttgagttcaaagtggctgagagtgcaattgctgct 60
Query: 181 ctgagttgcagtggtgtgatattgggttcactgcctataagggtaagtccatcaaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgagttgcagtggtgtgatattgggttcactgcctataagggtaagtccatcaaaaaca 120
Query: 241 ccagtacggtctcgctctcctcgctctccaatgtctcgctatcctcgttctccaatgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagtacggtctcgctctcctcgctctccaatgtctcgctatcctcgttctccaatgcac 180
Query: 301 tga 303
|||
Sbjct: 181 tga 183
>gnl|LJGI|TC71062 similar to UniRef100_A7QK80 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 745
Score = 60.0 bits (30), Expect = 8e-09
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 25 acaaatattgacaagaagcttactcaatctgatgtcaaaaacttctttgaatctatttgt 84
||||||||||| || ||| || ||||| |||| || || || || |||||||| ||||
Sbjct: 124 acaaatattgataaaaagatttctcaagctgaagtgaagaatttttttgaatcagcttgt 183
Query: 85 ggagaggttcaacggttgaggcttcttggggatcacaatcattcaactcgaattgctttt 144
|| |||||| ||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 184 ggtgaggttacacgcttgaggcttttgggggatcatgtgcattcaactcgaattgctttt 243
Query: 145 gt 146
||
Sbjct: 244 gt 245