Miyakogusa Predicted Gene
- Lj1g3v1063580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1063580.1 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1
OS=Triticum aestivum PE=1 SV=1,64.29,2e-19,60S ACIDIC RIBOSOMAL
PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein 60S;
seg,NULL,CUFF.26719.1
(339 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67241 similar to UniRef100_A7QEW1 Cluster: Chromosome... 672 0.0
gnl|LJGI|TC68487 weakly similar to UniRef100_Q5I7K5 Cluster: Rib... 60 9e-09
gnl|LJGI|TC66756 weakly similar to UniRef100_Q307Z7 Cluster: Aci... 60 9e-09
>gnl|LJGI|TC67241 similar to UniRef100_A7QEW1 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (94%)
Length = 610
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 1 atgtctgccggcgagttgggttgcatctacgccaccttgatcctccacgacgatggaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 atgtctgccggcgagttgggttgcatctacgccaccttgatcctccacgacgatggaatc 138
Query: 61 cccatcaccgcggagaagatcaacactttgttgaaggctgctaatgtcaccgtcgagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cccatcaccgcggagaagatcaacactttgttgaaggctgctaatgtcaccgtcgagtcc 198
Query: 121 tactggcctagccttttcgctaagcttgcccagaacaagaacgtcgatgacctcgttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tactggcctagccttttcgctaagcttgcccagaacaagaacgtcgatgacctcgttttg 258
Query: 181 aacgctggtgtcgccagcggtgccgctgttgccgtttccgctcctggtgccgccgctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacgctggtgtcgccagcggtgccgctgttgccgtttccgctcctggtgccgccgctggt 318
Query: 241 ggtggtgacgccgctgccgctgcacctgctaaggaggagaagaaggaagaggcaaaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtggtgacgccgctgccgctgcacctgctaaggaggagaagaaggaagaggcaaaggaa 378
Query: 301 gaaagtgatgatgacatgggattcagcttgttcgattag 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaagtgatgatgacatgggattcagcttgttcgattag 417
>gnl|LJGI|TC68487 weakly similar to UniRef100_Q5I7K5 Cluster: Ribosomal protein P1;
n=1; Triticum aestivum|Rep: Ribosomal protein P1 -
Triticum aestivum (Wheat), complete
Length = 588
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 274 gaggagaagaaggaagaggcaaaggaagaaagtgatgatgacatgggattcagcttgttc 333
|||||||| |||||||| | |||||||| ||||| ||||| |||||||||||| ||||
Sbjct: 379 gaggagaaaaaggaagaacccaaggaagagagtgacgatgatatgggattcagcctgttt 438
Query: 334 gattag 339
||||||
Sbjct: 439 gattag 444
>gnl|LJGI|TC66756 weakly similar to UniRef100_Q307Z7 Cluster: Acidic ribosomal
protein P1a-like; n=1; Solanum tuberosum|Rep: Acidic
ribosomal protein P1a-like - Solanum tuberosum (Potato),
partial (98%)
Length = 770
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 274 gaggagaagaaggaagaggcaaaggaagaaagtgatgatgacatgggattcagcttgttc 333
|||||||| |||||||| | |||||||| ||||| ||||| |||||||||||| ||||
Sbjct: 382 gaggagaaaaaggaagaacccaaggaagagagtgacgatgatatgggattcagcctgttt 441
Query: 334 gattag 339
||||||
Sbjct: 442 gattag 447