Miyakogusa Predicted Gene
- Lj1g3v1063550.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1063550.1 Non Chatacterized Hit- tr|C5XL49|C5XL49_SORBI
Putative uncharacterized protein Sb03g002180
OS=Sorghu,46.07,0.000000000008,RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RRM_1,RNA
recogni,CUFF.26718.1
(942 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome... 1776 0.0
gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-bindin... 1045 0.0
gnl|LJGI|BP051340 homologue to UniRef100_A7P4F7 Cluster: Chromos... 131 9e-30
>gnl|LJGI|TC61411 similar to UniRef100_A7QEW4 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 1558
Score = 1776 bits (896), Expect = 0.0
Identities = 935/943 (99%), Gaps = 5/943 (0%)
Strand = Plus / Plus
Query: 1 atggcggttgctgagaatgctggagccaaaatcggttcttccggtcagaatttggacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atggcggttgctgagaatgctggagccaaaatcggttcttccggtcagaatttggacaac 311
Query: 61 aacaacactgttgtgtcagctgaggactcaagtgaggtggagaaatcgaagactaggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aacaacactgttgtgtcagctgaggactcaagtgaggtggagaaatcgaagactaggacc 371
Query: 121 gatcagaatctgagcaacggtggtttcaaccatgaacatcatcctgggaacatagcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gatcagaatctgagcaacggtggtttcaaccatgaacatcatcctgggaacatagcagtt 431
Query: 181 cctaatggcaactacagctataatgctcaagtgggtcagatgcaagcaaatggtgtccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctaatggcaactacagctataatgctcaagtgggtcagatgcaagcaaatggtgtccag 491
Query: 241 aaccagcagcttgtgatgaacaatgatgggtatggggagaatgggg-atgagagtttcaa 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 492 aaccagcagcttgtgatgaacaatgatgggtatggggagaatgggggatgagagtttcaa 551
Query: 300 gcgtgacatgagggatttggctgagctgttgtcaaagttgaaccccatggctgaggaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcgtgacatgagggatttggctgagctgttgtcaaagttgaaccccatggctgaggaatt 611
Query: 360 tgtgcccccttcactgactaatagccatggctatttagctggacctaatgctgggtttgg 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 612 tgtgcccccttcactgactaatagccatggctatttagctggac-taatgctgggtttgg 670
Query: 420 ttatcctaacaattttattctgcaaaatgattttggacagactaatagaaggaggaagaa 479
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 671 t-atcctaacaattttattctgcaaaatgattttggacagactaatagaaggaggag--a 727
Query: 480 tgtctataattctgggaagagaagaatttttcataagatagaaatggagaaaagggatga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgtctataattctgggaagagaagaatttttcataagatagaaatggagaaaagggatga 787
Query: 540 gatgattcggaggactgtttacgtgtctgacattgatcaactggtcactgaagagcagct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gatgattcggaggactgtttacgtgtctgacattgatcaactggtcactgaagagcagct 847
Query: 600 ggcagctctatttcttaactgtggccaggtggttgattgccgtgtatgtggggatcctaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ggcagctctatttcttaactgtggccaggtggttgattgccgtgtatgtggggatcctaa 907
Query: 660 ttcaattcttcggttcgcctttgttgagtttacagatgaagaaggtgcaaggactgcttt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ttcaattcttcggttcgcctttgttgagtttacagatgaagaaggtgcaaggactgcttt 967
Query: 720 gaacctgtctggaactatgcttggatactacccactgagagtgctgccttcgaaaactgc 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 968 gaacctgtctggaactatgcttgggtactacccactgagagtgctgccttcgaaaactgc 1027
Query: 780 cattgcacctgttaatccaacttttttgcccaggtctgaagatgaaagggagatgtgctc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 cattgcacctgttaatccaacttttttgcccaggtctgaagatgaaagggagatgtgctc 1087
Query: 840 aagaacaatttactgcacaaatattgacaagaagcttactcaatctgatgtcaaaaactt 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 aaggacaatttactgcacaaatattgacaagaagcttactcaatctgatgtcaaaaactt 1147
Query: 900 ctttgaatctatttgtggagaggttcaacggttgaggcttctt 942
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ctttgaatctatttgtggagaggttcaacggttgaggcttctt 1190
>gnl|LJGI|TC81719 similar to UniRef100_Q0WQ17 Cluster: RNA-binding-like protein; n=1;
Arabidopsis thaliana|Rep: RNA-binding-like protein -
Arabidopsis thaliana (Mouse-ear cress), partial (57%)
Length = 1421
Score = 1045 bits (527), Expect = 0.0
Identities = 544/547 (99%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 1 atggcggttgctgagaatgctggagccaaaatcggttcttccggtcagaatttggacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atggcggttgctgagaatgctggagccaaaatcggttcttccggtcagaatttggacaac 293
Query: 61 aacaacactgttgtgtcagctgaggactcaagtgaggtggagaaatcgaagactaggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aacaacactgttgtgtcagctgaggactcaagtgaggtggagaaatcgaagactaggacc 353
Query: 121 gatcagaatctgagcaacggtggtttcaaccatgaacatcatcctgggaacatagcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gatcagaatctgagcaacggtggtttcaaccatgaacatcatcctgggaacatagcagtt 413
Query: 181 cctaatggcaactacagctataatgctcaagtgggtcagatgcaagcaaatggtgtccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctaatggcaactacagctataatgctcaagtgggtcagatgcaagcaaatggtgtccag 473
Query: 241 aaccagcagcttgtgatgaacaatgatgggtatggggagaatggggatgagagtttcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaccagcagcttgtgatgaacaatgatgggtatggggagaatggggatgagagtttcaag 533
Query: 301 cgtgacatgagggatttggctgagctgttgtcaaagttgaaccccatggctgaggaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cgtgacatgagggatttggctgagctgttgtcaaagttgaaccccatggctgaggaattt 593
Query: 361 gtgcccccttcactgactaatagccatggctatttagctggacctaatgctgggtttggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtgcccccttcactgactaatagccatggctatttagctggacctaatgctgggtttggt 653
Query: 421 tatcctaacaa-ttttattctgcaaaatgattttggacagactaatagaaggaggaagaa 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tatcctaacaatttttattctgcaaaatgattttggacagactaatagaaggaggaagaa 713
Query: 480 tgtctataattctgggaagagaagaatttttcataagatagaaatggagaaaagggatga 539
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgtctataattct-gcaagagaagaatttttcataagatagaaatggagaaaagggatga 772
Query: 540 gatgatt 546
|||||||
Sbjct: 773 gatgatt 779
Score = 607 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Plus
Query: 633 tgattgccgtgtatgtggggatcctaattcaattcttcggttcgcctttgttgagtttac 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgattgccgtgtatgtggggatcctaattcaattcttcggttcgcctttgttgagtttac 834
Query: 693 agatgaagaaggtgcaaggactgctttgaacctgtctggaactatgcttggatactaccc 752
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agatgaagaaggtgcagggactgctttgaacctgtctggaactatgcttggatactaccc 894
Query: 753 actgagagtgctgccttcgaaaactgccattgcacctgttaatccaacttttttgcccag 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 actgagagtgctgccttcgaaaactgccattgcacctgttaatccaacttttttgcccag 954
Query: 813 gtctgaagatgaaagggagatgtgctcaagaacaatttactgcacaaatattgacaagaa 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gtctgaagatgaaagggagatgtgctcaagaacaatttactgcacaaatattgacaagaa 1014
Query: 873 gcttactcaatctgatgtcaaaaacttctttgaatctatttgtggagaggttcaacggtt 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 gcttactcaatctgatgtcaaaaacttctttgaatctatttgtggagaggttcaacggtt 1074
Query: 933 gaggcttctt 942
||||||||||
Sbjct: 1075 gaggcttctt 1084
>gnl|LJGI|BP051340 homologue to UniRef100_A7P4F7 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 537
Score = 131 bits (66), Expect = 9e-30
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 755 tgagagtgctgccttcgaaaactgccattgcacctgttaatccaacttttttgcccaggt 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 537 tgagagtgctgccttcgaaaactgccattgcacctgttaatccaacttttttgcncaggt 478
Query: 815 ctgaagatg 823
|||||||||
Sbjct: 477 ctgaagatg 469