Miyakogusa Predicted Gene
- Lj1g3v0986640.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0986640.1 Non Chatacterized Hit- tr|Q9LXF5|Q9LXF5_ARATH
Putative uncharacterized protein F8M21_160 OS=Arabidop,34.29,2e-18,no
description,NULL; K homology RNA-binding domain,K Homology domain;
KH_TYPE_1,K Homology domain, t,CUFF.26634.1
(1629 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65938 similar to UniRef100_Q9LVU6 Cluster: RNA-bindin... 777 0.0
gnl|LJGI|AV417841 similar to UniRef100_A7QF15 Cluster: Chromosom... 573 e-162
gnl|LJGI|TC62905 similar to UniRef100_Q9LVU6 Cluster: RNA-bindin... 327 1e-88
>gnl|LJGI|TC65938 similar to UniRef100_Q9LVU6 Cluster: RNA-binding protein-like; n=1;
Arabidopsis thaliana|Rep: RNA-binding protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (12%)
Length = 699
Score = 777 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus
Query: 1238 aaacttcctcaatctatcagaatgtgcaaagtatggcagcagcccttccatcaaaggaaa 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacttcctcaatctatcagaatgtgcaaagtatggcagcagcccttccatcaaaggaaa 60
Query: 1298 gtggaggatctagctttgaggcaggaaaacaaaaagaaagtgaccgtggagatgatgtgc 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggaggatctagctttgaggcaggaaaacaaaaagaaagtgaccgtggagatgatgtgc 120
Query: 1358 tcggcagtttaaataggcttgctgtgcctctcgtcacaaggagtacacttgaagttgtca 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcggcagtttaaataggcttgctgtgcctctcgtcacaaggagtacacttgaagttgtca 180
Query: 1418 taccagagtatgcagttccgaagcttacagcaaaatccagaagcaagctcgcacagataa 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taccagagtatgcagttccgaagcttacagcaaaatccagaagcaagctcgcacagataa 240
Query: 1478 gtgagttatccggagccaatgtgactcttgttgaggatagaccagatgtgacgcagaaaa 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgagttatccggagccaatgtgactcttgttgaggatagaccagatgtgacgcagaaaa 300
Query: 1538 ttattcagatatctggtactccagagcaggcagagagagcccagagcttacttcaaggat 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttattcagatatctggtactccagagcaggcagagagagcccagagcttacttcaaggat 360
Query: 1598 ttattttgagcactcaagaagatggcccttga 1629
||||||||||||||||||||||||||||||||
Sbjct: 361 ttattttgagcactcaagaagatggcccttga 392
>gnl|LJGI|AV417841 similar to UniRef100_A7QF15 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 299
Score = 573 bits (289), Expect = e-162
Identities = 295/297 (99%)
Strand = Plus / Plus
Query: 855 ggaagctttgctacatatacaaactcgtattgtcgatcttgttcttgataaggacaattt 914
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3 ggaagctttgctacatatacaaactcgtattgtctatcttgttcttgataaggacaattt 62
Query: 915 tataaccaccaggcttgttgttccttctagctacattgaatgcttagatggaaaagatgc 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tataaccaccaggcttgttgttccttctagctacattgaatgcttagatggaaaagatgc 122
Query: 975 atcactatcggaaataaggaggttgactggggctaatattcaaatattgcctagagaaga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atcactatcggaaataaggaggttgactggggctaatattcaaatattgcctagagaaga 182
Query: 1035 actaccttcctgtgttgcaaaaactgatgaattggtacagattgtgggagagataaaagc 1094
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 183 actaccttcctgtgttgcaaaaactgatgaattggcacagattgtgggagagataaaagc 242
Query: 1095 agcccgagatgctgttgttgaggtgacctcaagattaagaagttacttgtataggga 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agcccgagatgctgttgttgaggtgacctcaagattaagaagttacttgtataggga 299
>gnl|LJGI|TC62905 similar to UniRef100_Q9LVU6 Cluster: RNA-binding protein-like; n=1;
Arabidopsis thaliana|Rep: RNA-binding protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (17%)
Length = 721
Score = 327 bits (165), Expect = 1e-88
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 1 atgcccggagatgaggagcggatcatcgagatcagtgacacgcgccggcaggacccggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgcccggagatgaggagcggatcatcgagatcagtgacacgcgccggcaggacccggat 616
Query: 61 aggaggatgccgtcgttctcgccggcgcaggaggcgttgctgatgatacatgagaggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggaggatgccgtcgttctcgccggcgcaggaggcgttgctgatgatacatgagaggatc 676
Query: 121 ctggaggctgatgcgggggttggggaggaggatgaggagtatgga 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctggaggctgatgcgggggttggggaggaggatgaggagtatgga 721