Miyakogusa Predicted Gene

Lj1g3v0807620.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0807620.1 Non Chatacterized Hit- tr|I1KA90|I1KA90_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23237 PE,89.83,0,GENERAL
TRANSCRIPTION FACTOR IIH SUBUNIT 3,NULL; TRANSCRIPTION INITIATION
FACTOR IIH (TFIIH), POLYPE,CUFF.26357.1
         (885 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72596 similar to UniRef100_Q9LPQ2 Cluster: F15H18.15;...   618   e-176

>gnl|LJGI|TC72596 similar to UniRef100_Q9LPQ2 Cluster: F15H18.15; n=1; Arabidopsis
           thaliana|Rep: F15H18.15 - Arabidopsis thaliana
           (Mouse-ear cress), partial (12%)
          Length = 554

 Score =  618 bits (312), Expect = e-176
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccttccgctccttcaaagctctacgcagatgatgttagccttctcgtcgtcacgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgccttccgctccttcaaagctctacgcagatgatgttagccttctcgtcgtcacgctt 302

                                                                       
Query: 61  gacaccaaccctttcttctggagcactttctcctccccgttctccgatttcctctctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gacaccaaccctttcttctggagcactttctcctccccgttctccgatttcctctctcag 362

                                                                       
Query: 121 gtgctcgcttttctcaactcgatcctcctcctcggtcagcttaaccaggtcgtcgtcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgctcgcttttctcaactcgatcctcctcctcggtcagcttaaccaggtcgtcgtcatc 422

                                                                       
Query: 181 gccaccgggtgcaattcttgcggctacgtttacgattccgcttccgataagaaccatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gccaccgggtgcaattcttgcggctacgtttacgattccgcttccgataagaaccatgct 482

                                                                       
Query: 241 tccacaaccggcaccatgccggcgctatattccaatctgctccgcaaccttgaacagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tccacaaccggcaccatgccggcgctatattccaatctgctccgcaaccttgaacagttt 542

                       
Query: 301 gttgctagggac 312
           ||||||||||||
Sbjct: 543 gttgctagggac 554