Miyakogusa Predicted Gene
- Lj1g3v0748030.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0748030.1 tr|G7J463|G7J463_MEDTR Auxin response factor
OS=Medicago truncatula GN=MTR_3g073420 PE=4 SV=1,71.27,0,seg,NULL;
B3,B3 DNA binding domain; no description,DNA-binding pseudobarrel
domain; Auxin_resp,Auxin,CUFF.26271.1
(1461 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72330 weakly similar to UniRef100_Q9AV47 Cluster: Aux... 549 e-155
gnl|LJGI|BP038373 weakly similar to UniRef100_A7NV55 Cluster: Ch... 458 e-128
>gnl|LJGI|TC72330 weakly similar to UniRef100_Q9AV47 Cluster: Auxin response factor
22; n=1; Oryza sativa Japonica Group|Rep: Auxin response
factor 22 - Oryza sativa subsp. japonica (Rice), partial
(27%)
Length = 769
Score = 549 bits (277), Expect = e-155
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 474 gctgtcgccgaagtcggttgcggaggcgatggagttggctgcacaggatatgccgttcga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctgtcgccgaagtcggttgcggaggcgatggagttggctgcacaggatatgccgttcga 448
Query: 534 ggtggtgtattatccgaaggctgggtggtccgattttgtggtgaaggcggaggctgtgga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtggtgtattatccgaaggctgggtggtccgattttgtggtgaaggcggaggctgtgga 508
Query: 594 ggaagcgattcgtgttaggtggagccctgggatgagggtgaaaatggctgtggagactga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaagcgattcgtgttaggtggagccctgggatgagggtgaaaatggctgtggagactga 568
Query: 654 tgattcgtccaggttgacctggtttcagggaatggtctcttcggtcagtttttctgataa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgattcgtccaggttgacctggtttcagggaatggtctcttcggtcagtttttctgataa 628
Query: 714 tgccccttggccacgctccccttggcgtatgcttcag 750
|||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgccccttggccacgctccccttggcgtatgcttcag 665
Score = 519 bits (262), Expect = e-146
Identities = 277/282 (98%)
Strand = Plus / Plus
Query: 114 cccggcgcttgccccccgggcggccccgccggtgcagaatctgattatcactgatgttca 173
||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 29 cccggcgcttgactaccaggcggacccgccggtgcagaatctgattatcactgatgttca 88
Query: 174 cggcgtggcgtgggagtttcggcacatttaccgcgggactccgaggcggcacctgcttac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 cggcgtggcgtgggagtttcggcacatttaccgcgggactccgaggcggcacctgcttac 148
Query: 234 taccgggtggagcaagttcgttaacagcaagaagctcgtcgccggcgactctgtcgtgtt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 taccgggtggagcaagttcgttaacagcaagaagctcgtcgccggcgactctgtcgtgtt 208
Query: 294 catgaagaaccccaggggggagatgtttgttggactccgccgcgcctctcggtttgccgg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catgaagaaccccaggggggagatgtttgttggactccgccgcgcctctcggtttgccgg 268
Query: 354 cggcggcgacggggccaggcggagttttccgatcggcgtggt 395
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cggcggcgacggggccaggcggagttttccgatcggcgtggt 310
Score = 99.6 bits (50), Expect = 5e-20
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 28 tgccgaggttctgcgctgattcaatcttcccggcgcttgactacccggcgggcccgcc 85
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1 tgccgaggttctgcgctgattcaatcttcccggcgcttgactaccaggcggacccgcc 58
>gnl|LJGI|BP038373 weakly similar to UniRef100_A7NV55 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (7%)
Length = 489
Score = 458 bits (231), Expect = e-128
Identities = 252/259 (97%)
Strand = Plus / Minus
Query: 1203 ctctgttaggaaccagaacagcaactcagctaaacctgggtctttttcatttcagctatt 1262
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctctgttaggaaccagaacagccactcagctaaacctgggtctttttcatttcagctatt 430
Query: 1263 tggtgcaatcattcatacaaaacagcctgatgaaagtggttcacagggtactggttgtac 1322
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tggtgccatcattcataccaaacagcctgatgaaagtggttcacagggtactggttgtac 370
Query: 1323 aggagatgatagcagcaagggcaacgaaactgaaggcattgacaacccgctggatgattc 1382
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369 cggagatgatagcagcaagggcaacgaaactgaaggccttgacaacccgctggatgattc 310
Query: 1383 tttgacttactcaaaattgcttgacaggcttgatagccaatgccaaagagcctcgactgt 1442
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 309 tttgacttactcaaaattgcttgacaggcttgatagcccatgcccaagagcctcgactgt 250
Query: 1443 ggaggcatgttatttgtga 1461
|||||||||||||||||||
Sbjct: 249 ggaggcatgttatttgtga 231