Miyakogusa Predicted Gene

Lj1g3v0748030.1
Show Alignment: 
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0748030.1 tr|G7J463|G7J463_MEDTR Auxin response factor
OS=Medicago truncatula GN=MTR_3g073420 PE=4 SV=1,71.27,0,seg,NULL;
B3,B3 DNA binding domain; no description,DNA-binding pseudobarrel
domain; Auxin_resp,Auxin,CUFF.26271.1
         (1461 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72330 weakly similar to UniRef100_Q9AV47 Cluster: Aux...   549   e-155
gnl|LJGI|BP038373 weakly similar to UniRef100_A7NV55 Cluster: Ch...   458   e-128

>gnl|LJGI|TC72330 weakly similar to UniRef100_Q9AV47 Cluster: Auxin response factor
           22; n=1; Oryza sativa Japonica Group|Rep: Auxin response
           factor 22 - Oryza sativa subsp. japonica (Rice), partial
           (27%)
          Length = 769

 Score =  549 bits (277), Expect = e-155
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 474 gctgtcgccgaagtcggttgcggaggcgatggagttggctgcacaggatatgccgttcga 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctgtcgccgaagtcggttgcggaggcgatggagttggctgcacaggatatgccgttcga 448

                                                                       
Query: 534 ggtggtgtattatccgaaggctgggtggtccgattttgtggtgaaggcggaggctgtgga 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtggtgtattatccgaaggctgggtggtccgattttgtggtgaaggcggaggctgtgga 508

                                                                       
Query: 594 ggaagcgattcgtgttaggtggagccctgggatgagggtgaaaatggctgtggagactga 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaagcgattcgtgttaggtggagccctgggatgagggtgaaaatggctgtggagactga 568

                                                                       
Query: 654 tgattcgtccaggttgacctggtttcagggaatggtctcttcggtcagtttttctgataa 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgattcgtccaggttgacctggtttcagggaatggtctcttcggtcagtttttctgataa 628

                                                
Query: 714 tgccccttggccacgctccccttggcgtatgcttcag 750
           |||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgccccttggccacgctccccttggcgtatgcttcag 665



 Score =  519 bits (262), Expect = e-146
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 114 cccggcgcttgccccccgggcggccccgccggtgcagaatctgattatcactgatgttca 173
           ||||||||||| |  || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 29  cccggcgcttgactaccaggcggacccgccggtgcagaatctgattatcactgatgttca 88

                                                                       
Query: 174 cggcgtggcgtgggagtttcggcacatttaccgcgggactccgaggcggcacctgcttac 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  cggcgtggcgtgggagtttcggcacatttaccgcgggactccgaggcggcacctgcttac 148

                                                                       
Query: 234 taccgggtggagcaagttcgttaacagcaagaagctcgtcgccggcgactctgtcgtgtt 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 taccgggtggagcaagttcgttaacagcaagaagctcgtcgccggcgactctgtcgtgtt 208

                                                                       
Query: 294 catgaagaaccccaggggggagatgtttgttggactccgccgcgcctctcggtttgccgg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catgaagaaccccaggggggagatgtttgttggactccgccgcgcctctcggtttgccgg 268

                                                     
Query: 354 cggcggcgacggggccaggcggagttttccgatcggcgtggt 395
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cggcggcgacggggccaggcggagttttccgatcggcgtggt 310



 Score = 99.6 bits (50), Expect = 5e-20
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                    
Query: 28 tgccgaggttctgcgctgattcaatcttcccggcgcttgactacccggcgggcccgcc 85
          ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1  tgccgaggttctgcgctgattcaatcttcccggcgcttgactaccaggcggacccgcc 58


>gnl|LJGI|BP038373 weakly similar to UniRef100_A7NV55 Cluster: Chromosome chr18
            scaffold_1, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 489

 Score =  458 bits (231), Expect = e-128
 Identities = 252/259 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1203 ctctgttaggaaccagaacagcaactcagctaaacctgggtctttttcatttcagctatt 1262
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489  ctctgttaggaaccagaacagccactcagctaaacctgggtctttttcatttcagctatt 430

                                                                        
Query: 1263 tggtgcaatcattcatacaaaacagcctgatgaaagtggttcacagggtactggttgtac 1322
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  tggtgccatcattcataccaaacagcctgatgaaagtggttcacagggtactggttgtac 370

                                                                        
Query: 1323 aggagatgatagcagcaagggcaacgaaactgaaggcattgacaacccgctggatgattc 1382
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369  cggagatgatagcagcaagggcaacgaaactgaaggccttgacaacccgctggatgattc 310

                                                                        
Query: 1383 tttgacttactcaaaattgcttgacaggcttgatagccaatgccaaagagcctcgactgt 1442
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 309  tttgacttactcaaaattgcttgacaggcttgatagcccatgcccaagagcctcgactgt 250

                               
Query: 1443 ggaggcatgttatttgtga 1461
            |||||||||||||||||||
Sbjct: 249  ggaggcatgttatttgtga 231