Miyakogusa Predicted Gene
- Lj1g3v0738020.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0738020.1 tr|G7J467|G7J467_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g073470 PE=3
S,79.07,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; SERINE
HYDROXYMETHYLTRANSFERASE,Serine hydroxymethyltransferase;,CUFF.26232.1
(1665 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS339145 similar to UniRef100_A9PL07 Cluster: Serine hy... 1485 0.0
gnl|LJGI|BW602723 similar to UniRef100_A7PG82 Cluster: Chromosom... 331 8e-90
gnl|LJGI|TC73777 similar to UniRef100_A7NV50 Cluster: Chromosome... 319 3e-86
gnl|LJGI|DC596611 similar to UniRef100_A9PL07 Cluster: Serine hy... 188 8e-47
>gnl|LJGI|FS339145 similar to UniRef100_A9PL07 Cluster: Serine hydroxymethyltransferase;
n=1; Populus tremuloides|Rep: Serine
hydroxymethyltransferase - Populus tremuloides (Quaking
aspen), partial (44%)
Length = 749
Score = 1485 bits (749), Expect = 0.0
Identities = 749/749 (100%)
Strand = Plus / Plus
Query: 643 gggcttgattcaccttctggtgggcatttgagtcatgggtattatactttgggtgggaag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcttgattcaccttctggtgggcatttgagtcatgggtattatactttgggtgggaag 60
Query: 703 aaggttgctgctgcttccattttctttcagactttggcttacaaggttaatcctcaaact 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaggttgctgctgcttccattttctttcagactttggcttacaaggttaatcctcaaact 120
Query: 763 gggtatatagattatgacaagcttgaggaaaaagctgtggattttcgacctaagatactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggtatatagattatgacaagcttgaggaaaaagctgtggattttcgacctaagatactt 180
Query: 823 atttgtggtggaagttcttatcctagagagtgggattatgggaggttcaggcagattgct 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttgtggtggaagttcttatcctagagagtgggattatgggaggttcaggcagattgct 240
Query: 883 gataaatgcggggcggtgttgatgtgtgacatggctcatatcagtggtcttgtggcagct 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gataaatgcggggcggtgttgatgtgtgacatggctcatatcagtggtcttgtggcagct 300
Query: 943 aaggaaggagttagtccatttaattactgtgatattgttacttcaacaacccacaaaagt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggaaggagttagtccatttaattactgtgatattgttacttcaacaacccacaaaagt 360
Query: 1003 ctccggggtccaaggggaggtatcatcttttacagaaaagggccaagaccaaggaagcaa 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctccggggtccaaggggaggtatcatcttttacagaaaagggccaagaccaaggaagcaa 420
Query: 1063 gggtcggttcataatcacggagatgatatcaattatgattttgaggagaagataaacttt 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggtcggttcataatcacggagatgatatcaattatgattttgaggagaagataaacttt 480
Query: 1123 gcattatatccatcattacaaggtggaccccacaataatcacattgctgctcttgccata 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcattatatccatcattacaaggtggaccccacaataatcacattgctgctcttgccata 540
Query: 1183 tctttcaaacaagttgcaactccagagtacaaagcatatatgcagcaggtgaagaaaaat 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctttcaaacaagttgcaactccagagtacaaagcatatatgcagcaggtgaagaaaaat 600
Query: 1243 gcacaggcattagcatctgccttgatgagaagaaaatgcagattggtgactgatgggacg 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcacaggcattagcatctgccttgatgagaagaaaatgcagattggtgactgatgggacg 660
Query: 1303 gacaatcatcttttgctctgggatctaactgtgcttggcttaattgacagaaactatgag 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gacaatcatcttttgctctgggatctaactgtgcttggcttaattgacagaaactatgag 720
Query: 1363 aaggtctgtgaggcttgtcatatcactat 1391
|||||||||||||||||||||||||||||
Sbjct: 721 aaggtctgtgaggcttgtcatatcactat 749
>gnl|LJGI|BW602723 similar to UniRef100_A7PG82 Cluster: Chromosome chr6 scaffold_15,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr6 scaffold_15, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 456
Score = 331 bits (167), Expect = 8e-90
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 152 gtgaaacgatcaacttcatgggtagacctatgtgcttgaagaggcacatagaagaagaag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtgaaacgatcaacttcatgggtagacctatgtgcttgaagaggcacatagaagaagaag 349
Query: 212 aaccacaacaacaacaatcgtgtttcccggcgaagcgcgtcgcggtggattccgcggcgg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaccacaacaacaacaatcgtgtttcccggcgaagcgcgtcgcggtggattccgcggcgg 409
Query: 272 aggcgcggcgaggttgggggaaccagccgctgtgcgttgcagaccct 318
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggcgcggcgaggttgggggaaccagccgctgtgcgttgcagaccct 456
Score = 244 bits (123), Expect = 1e-63
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 atggattctcaaccgggtctatcactcgggctgaacgctccgacgccatcgccgccgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atggattctcaaccgggtctatcactcgggctgaacgctccgacgccatcgccgccgccg 198
Query: 61 actgctcattccgccctctctgctccgtggcgtttacacgacgagaaacccgaacccgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 actgctcattccgccctctctgctccgtggcgtttacacgacgagaaacccgaacccgaa 258
Query: 121 ctc 123
|||
Sbjct: 259 ctc 261
>gnl|LJGI|TC73777 similar to UniRef100_A7NV50 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 625
Score = 319 bits (161), Expect = 3e-86
Identities = 271/305 (88%), Gaps = 7/305 (2%)
Strand = Plus / Plus
Query: 1362 gaaggtctgtgaggcttgtcatatcactatcaataaatgtgccatttatggttctatttc 1421
||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| ||||||
Sbjct: 5 gaaggtctgtgagacttttcacatcactatcaatcaatgtgccatttatggttttatttc 64
Query: 1422 ctcaggaggtgtgagaattggcactcctgcaatgacaacaagaggctgcttagagaatga 1481
|| ||| || || ||||||| |||||||||||| ||||| ||||| ||||| ||||
Sbjct: 65 ttccggacaagtaaggattggcagtcctgcaatgactacaaggggctgtttagaagatga 124
Query: 1482 ttttgagaccatagccgattttcttctgagggcagctgagattactag-cattatacaga 1540
||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct: 125 ttttgagaccatagccgattttctt--gagggcagctgagattaccaggcattatacaga 182
Query: 1541 gggaacatgggaaatcgtgcaaggagtttctcaagggtcttcagaacaataaagatattg 1600
||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 183 gggaacacaggaaatcatgcaaggagtttctcaagggtcttcagaaccataaagatattt 242
Query: 1601 ctgagctcagaaatcgtgt----tgagacatttagttcccagtttgcaatgcctggattt 1656
| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 243 cggagctcagaaatcgtgttgagtgagacatttagttcccagtttgcaatgccaggattt 302
Query: 1657 gatat 1661
||||
Sbjct: 303 aatat 307
>gnl|LJGI|DC596611 similar to UniRef100_A9PL07 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (11%)
Length = 394
Score = 188 bits (95), Expect = 8e-47
Identities = 164/187 (87%)
Strand = Plus / Plus
Query: 242 cgaagcgcgtcgcggtggattccgcggcggaggcgcggcgaggttgggggaaccagccgc 301
||||||| || ||||||||||| | ||| ||||| ||||||||||| ||||||||||| |
Sbjct: 79 cgaagcgtgtggcggtggattcaggggctgaggcacggcgaggttgagggaaccagccac 138
Query: 302 tgtgcgttgcagaccctgagattcacgagatcatggagaaggagaaatggagacagttca 361
| ||||| | |||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct: 139 tctgcgtgacggaccctgatataaacgagatcatggagaaggagaagtggagacagttca 198
Query: 362 gagggatagagctgattgcgtctgagaatttcgtgtgtagggcggtgatggaagctttgg 421
| || |||||||||||||| ||||||||||| ||||| ||||| |||||||||||| |||
Sbjct: 199 ggggaatagagctgattgcatctgagaattttgtgtgcagggcagtgatggaagctctgg 258
Query: 422 gtagcca 428
|||||||
Sbjct: 259 gtagcca 265
Score = 56.0 bits (28), Expect = 7e-07
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 946 gaaggagttagtccatttaattactgtgatattgttacttcaacaacccacaaaagtctc 1005
||||||| |||| |||||||||||| |||| || |||||||||||||||||| | |||
Sbjct: 292 gaaggagctagttcatttaattactttgatttt---acttcaacaacccacaaatgactc 348
Query: 1006 cggggtccaa 1015
|| |||||||
Sbjct: 349 cgaggtccaa 358