Miyakogusa Predicted Gene
- Lj1g3v0652020.5
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0652020.5 tr|Q9M5P7|Q9M5P7_ARATH RSH1 OS=Arabidopsis
thaliana GN=RSH1 PE=2 SV=1,100,0.004, ,CUFF.26122.5
(270 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75776 homologue to UniRef100_Q3EAC8 Cluster: Uncharac... 383 e-106
gnl|LJGI|GO025213 homologue to UniRef100_Q84LE7 Cluster: RelA-Sp... 361 1e-99
gnl|LJGI|BW595193 homologue to UniRef100_Q84LE7 Cluster: RelA-Sp... 82 2e-15
gnl|LJGI|BP055049 72 2e-12
>gnl|LJGI|TC75776 homologue to UniRef100_Q3EAC8 Cluster: Uncharacterized protein
At4g02260.3; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At4g02260.3 - Arabidopsis
thaliana (Mouse-ear cress), partial (3%)
Length = 1191
Score = 383 bits (193), Expect = e-106
Identities = 208/213 (97%), Gaps = 5/213 (2%)
Strand = Plus / Plus
Query: 1 atgtttagacttgaagtccagattagaacagaagaaatggacttgatagccgaaagggga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 374 atgtttagacttgaagtccaga-----acagaagaaatggacttgatagccgaaagggga 428
Query: 61 ttccagctgaggttgcatcatttgtttgtaagaatgggaaagctacatggatctcaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttccagctgaggttgcatcatttgtttgtaagaatgggaaagctacatggatctcaattg 488
Query: 121 gtccatctggaaaaaagacagtttcagatacttgcacctgaaaaacccaagaaagtggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtccatctggaaaaaagacagtttcagatacttgcacctgaaaaacccaagaaagtggta 548
Query: 181 aaacgtttagaacatgttcatatgttcgtgagg 213
|||||||||||||||||||||||||||||||||
Sbjct: 549 aaacgtttagaacatgttcatatgttcgtgagg 581
>gnl|LJGI|GO025213 homologue to UniRef100_Q84LE7 Cluster: RelA-SpoT like protein RSH1;
n=1; Nicotiana tabacum|Rep: RelA-SpoT like protein RSH1
- Nicotiana tabacum (Common tobacco), partial (3%)
Length = 645
Score = 361 bits (182), Expect = 1e-99
Identities = 189/190 (99%), Gaps = 1/190 (0%)
Strand = Plus / Plus
Query: 57 gggattccagctgaggttgcatcatttgtttgtaagaatgggaaagctacatggatctca 116
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 457 gggattccagctgaggttgcatcatttgtttgtaagaatgggaa-gctacatggatctca 515
Query: 117 attggtccatctggaaaaaagacagtttcagatacttgcacctgaaaaacccaagaaagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 attggtccatctggaaaaaagacagtttcagatacttgcacctgaaaaacccaagaaagt 575
Query: 177 ggtaaaacgtttagaacatgttcatatgttcgtgaggtgtgtggatatatattatgggta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggtaaaacgtttagaacatgttcatatgttcgtgaggtgtgtggatatatattatgggta 635
Query: 237 ttgcatgatg 246
||||||||||
Sbjct: 636 ttgcatgatg 645
Score = 113 bits (57), Expect = 6e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1 atgtttagacttgaagtccagattagaacagaagaaatggacttgatagccgaaagg 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgtttagacttgaagtccagattagaacagaagaaatggacttgatagccgaaagg 356
>gnl|LJGI|BW595193 homologue to UniRef100_Q84LE7 Cluster: RelA-SpoT like protein RSH1;
n=1; Nicotiana tabacum|Rep: RelA-SpoT like protein RSH1
- Nicotiana tabacum (Common tobacco), partial (3%)
Length = 485
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 17 tccagattagaacagaagaaatggacttgatagccgaaagg 57
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tccagattagaacagaagaaatggacttgatagccgaaagg 335
>gnl|LJGI|BP055049
Length = 245
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 231 tgggtattgcatgatgtttttgggggttattatgtaatct 270
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 209 tgggtattgcatgatgtttttgggggtgattatgtaatct 170