Miyakogusa Predicted Gene

Lj1g3v0627420.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0627420.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,63.53,6e-19,IMMUNOGLOBULIN-BINDING PROTEIN 1,NULL;
IMMUNOGLOBULIN-BINDING PROTEIN 1,TAP42-like protein;
TAP42,TA,gene.g29974.t1.1
         (414 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67560 similar to UniRef100_A7QF26 Cluster: Chromosome...   589   e-168

>gnl|LJGI|TC67560 similar to UniRef100_A7QF26 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (38%)
          Length = 611

 Score =  589 bits (297), Expect = e-168
 Identities = 379/408 (92%), Gaps = 15/408 (3%)
 Strand = Plus / Plus

                                                                       
Query: 10  accagagtggaggagttgccgttaccggcgctgtttgagcaagcgcgggagatccacgcc 69
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 140 accagagtggaggagttgccgttaccggcgctgtttgagcaagcccgggagatccacgcc 199

                                                                       
Query: 70  accgccaa---------tgccgatcagaaggttgtgaagaagggttacgagaccttgcag 120
           |||||||          |||||||||| || |||||||||||||||||||||| || |||
Sbjct: 200 accgccacggaatccggtgccgatcaggagcttgtgaagaagggttacgagacgttacag 259

                                                                       
Query: 121 aaatgtgaggacatggttaataagctcggtttgttctcttcaaatgaaaccaaagaggat 180
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 260 aaatgtgaggacatggttaataagctcggtttgttctctgctaatgaaaccaaagaggat 319

                                                                       
Query: 181 atcagcaccggcaaccttaagtacattctggcacttgtgccattttatcttgctgagatg 240
           |||||||||||||||||||||||||||||||      |||| ||||||||||||||| ||
Sbjct: 320 atcagcaccggcaaccttaagtacattctgg------tgccgttttatcttgctgagttg 373

                                                                       
Query: 241 actgaacaaatagcacaggatgacaggatacagattgtaaaggcttcccagacaaaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| 
Sbjct: 374 actgaacaaatagcacaggatgacaggatacagattgtaaaggcttcgcaggcaaaacta 433

                                                                       
Query: 301 aaggaatttatctcattttgtgaagctatggagcttgtcccaaaagaggagttggaatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaggaatttatctcattttgtgaagctatggagcttgtcccaaaagaggagttggaatct 493

                                                           
Query: 361 tatacacaaggggcaccaaaatctgttgctgatcagagggcccgaaag 408
           ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatacgcaaggggcaccaaaatctgttgctgatcagagggcccgaaag 541