Miyakogusa Predicted Gene
- Lj1g3v0579450.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0579450.1 tr|B9HMA1|B9HMA1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1085726 PE=4
SV=1,76.81,8e-19,CALCIUM-BINDING PROTEIN 39-RELATED,Mo25-like;
Mo25,Mo25-like; seg,NULL; ARM repeat,Armadillo-type
fo,NODE_33875_length_1349_cov_36.931061.path1.1
(207 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59314 similar to UniRef100_A7NWD2 Cluster: Chromosome... 323 2e-88
gnl|LJGI|TC80741 similar to UniRef100_A7NWD2 Cluster: Chromosome... 289 3e-78
gnl|LJGI|BP043254 similar to UniRef100_A7NWD2 Cluster: Chromosom... 180 2e-45
>gnl|LJGI|TC59314 similar to UniRef100_A7NWD2 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (98%)
Length = 1296
Score = 323 bits (163), Expect = 2e-88
Identities = 196/207 (94%)
Strand = Plus / Plus
Query: 1 atgaagcactacatcttagaagtttatcatctgaaattcatcatgacattattgagggat 60
|||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 822 atgaagcagtacatcttagaagttcgttttctgaaagtcatcatgacattattgagggat 881
Query: 61 tcaagtaaaaacattcagttatcagctttccacatattcaaggttttcgttgctaatccg 120
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 882 tcaagtaaaaacattcagttatcagctttccacattttcaaggttttcgtagctaatccg 941
Query: 121 aataagccccaagaaatcaaaattattctggggaagaacaaggagaagctgctagagttg 180
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 942 aataaaccccgagaaatcaaaattattctgggcaagaacaaggagaagctgctagagttg 1001
Query: 181 cttcataatctgtctccgggaaaaggt 207
|||||||||||||||||||||||||||
Sbjct: 1002 cttcataatctgtctccgggaaaaggt 1028
>gnl|LJGI|TC80741 similar to UniRef100_A7NWD2 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 528
Score = 289 bits (146), Expect = 3e-78
Identities = 189/205 (92%)
Strand = Plus / Plus
Query: 3 gaagcactacatcttagaagtttatcatctgaaattcatcatgacattattgagggattc 62
|||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||||||
Sbjct: 13 gaagcagtacatnttagaagttngttttctgaaagtcatcatgacattatngagggattc 72
Query: 63 aagtaaaaacattcagttatcagctttccacatattcaaggttttcgttgctaatccgaa 122
||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||
Sbjct: 73 aagtaaaaacattcagttatcagctttccacattttcaaggttttggtagntaatccgaa 132
Query: 123 taagccccaagaaatcaaaattattctggggaagaacaaggagaagctgctagagttgct 182
||| |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 133 taaaccccgagaaatcaaaattattntgggcaagaacaaggagaagctgctagagttgct 192
Query: 183 tcataatctgtctccgggaaaaggt 207
|||||||||||||||||||||||||
Sbjct: 193 tcataatctgtctccgggaaaaggt 217
>gnl|LJGI|BP043254 similar to UniRef100_A7NWD2 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 503
Score = 180 bits (91), Expect = 2e-45
Identities = 103/107 (96%)
Strand = Plus / Minus
Query: 101 aggttttcgttgctaatccgaataagccccaagaaatcaaaattattctggggaagaaca 160
|||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 370 aggttttcgtagctaatccgaataaaccccgagaaatcaaaattattctgggcaagaaca 311
Query: 161 aggagaagctgctagagttgcttcataatctgtctccgggaaaaggt 207
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggagaagctgctagagttgcttcataatctgtctccgggaaaaggt 264