Miyakogusa Predicted Gene
- Lj1g3v0536740.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0536740.1 tr|G7JGQ4|G7JGQ4_MEDTR Eukaryotic translation
initiation factor 5A-1 OS=Medicago truncatula
GN=MTR_4,42.97,8e-17,IF5A_HYPUSINE,Translation elongation factor,
IF5A, hypusine site; Translation proteins SH3-like doma,CUFF.26001.1
(483 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryot... 957 0.0
gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translat... 432 e-121
gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translat... 432 e-121
gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 349 1e-95
gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryoti... 317 4e-86
gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 198 2e-50
gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translati... 186 9e-47
gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryo... 149 2e-35
>gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryotic translation
initiation factor 5A isoform II; n=1; Hevea
brasiliensis|Rep: Eukaryotic translation initiation
factor 5A isoform II - Hevea brasiliensis (Para rubber
tree), complete
Length = 739
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 142
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 202
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 262
Query: 181 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 322
Query: 241 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 382
Query: 301 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 442
Query: 361 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 502
Query: 421 gttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgggccaaagtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgggccaaagtaa 562
Query: 481 ggc 483
|||
Sbjct: 563 ggc 565
>gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 777
Score = 432 bits (218), Expect = e-121
Identities = 407/470 (86%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 86 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 145
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
||||| |||||||| ||||||||||||| ||| |||||| ||||||| || ||||||
Sbjct: 146 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 205
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 206 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 265
Query: 181 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 240
|||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||| || |||
Sbjct: 266 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 325
Query: 241 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 300
||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||
Sbjct: 326 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 385
Query: 301 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 360
||| |||| || |||||||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 386 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 445
Query: 361 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 420
|| ||||| || ||||||| ||||| || ||||||||||| || || |||||| |
Sbjct: 446 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 505
Query: 421 gttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgg 470
|| |||||||| ||||||||||| |||||| |||||| |||||||||||
Sbjct: 506 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattgg 555
>gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 818
Score = 432 bits (218), Expect = e-121
Identities = 407/470 (86%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 90 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 149
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
||||| |||||||| ||||||||||||| ||| |||||| ||||||| || ||||||
Sbjct: 150 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 209
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 210 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 269
Query: 181 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 240
|||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||| || |||
Sbjct: 270 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 329
Query: 241 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 300
||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||
Sbjct: 330 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 389
Query: 301 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 360
||| |||| || |||||||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 390 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 449
Query: 361 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 420
|| ||||| || ||||||| ||||| || ||||||||||| || || |||||| |
Sbjct: 450 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 509
Query: 421 gttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgg 470
|| |||||||| ||||||||||| |||||| |||||| |||||||||||
Sbjct: 510 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattgg 559
>gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 827
Score = 349 bits (176), Expect = 1e-95
Identities = 392/464 (84%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 44 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 103
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
|| ||||||||||| ||| ||||||| | ||||||||| ||||||||| | ||||||
Sbjct: 104 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 163
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||||
Sbjct: 164 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 223
Query: 181 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 240
||||| ||||| || ||||| | ||||||||||||||||||||| || |||||||| ||
Sbjct: 224 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 283
Query: 241 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 300
|||||| | |||||||| ||||||||||| |||||| | |||||||| | |||||||||
Sbjct: 284 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcagaggatgga 343
Query: 301 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 360
||| |||| ||||| ||||| ||| | || ||||||||||| ||||| ||||| |||
Sbjct: 344 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 403
Query: 361 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 420
|| ||||| ||| ||||| ||||| || |||| ||| |||||||| || ||| ||||
Sbjct: 404 gatgctctgcttaagcagatcaaggagggctttggtgatggtaaggatctggttgtgagt 463
Query: 421 gttatgtctgcaatgggtgaggagcagatttgtgccctgaagga 464
||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 464 gttatgtctgccatgggggaggagcagatttgtgcccttaagga 507
>gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 717
Score = 317 bits (160), Expect = 4e-86
Identities = 387/464 (83%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| ||||| |||||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 23 atgtctgacgaanagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 82
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
|| ||||||||||| ||| ||||||| | ||||||||| ||||||||| | ||||||
Sbjct: 83 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 142
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||||
Sbjct: 143 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 202
Query: 181 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 240
||||| ||||| || ||||| | ||||||||||||||||||||| || |||||||| ||
Sbjct: 203 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 262
Query: 241 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 300
|||||| | |||||||| ||||||||||| |||||| | |||||||| | ||||||||
Sbjct: 263 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcanaggatgga 322
Query: 301 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 360
||| |||| ||||| ||||| ||| | || ||||||||||| ||||| ||||| |||
Sbjct: 323 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 382
Query: 361 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 420
|| ||||| ||| ||||| ||||| || |||| ||| |||||||| || ||| ||||
Sbjct: 383 gatgctctgcttaagcagatcaaggaaggctttggtgatggtaaggatctggttgtgagt 442
Query: 421 gttatgtctgcaatgggtgaggagcagatttgtgccctgaagga 464
||||||||||| ||||| || || || ||||||||||| |||||
Sbjct: 443 gttatgtctgccatgggggaagancanatttgtgcccttaagga 486
>gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (81%)
Length = 691
Score = 198 bits (100), Expect = 2e-50
Identities = 187/216 (86%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct: 19 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 78
Query: 61 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 120
|| ||||||||||| ||| ||||||| | ||||||||| ||||||||| | ||||||
Sbjct: 79 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 138
Query: 121 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 180
||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||||
Sbjct: 139 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 198
Query: 181 gttgcaattgatattttcactgccaaaaagcttgag 216
||||| ||||| || ||||| | |||||||||||||
Sbjct: 199 gttgctattgacatcttcaccggcaaaaagcttgag 234
Score = 101 bits (51), Expect = 4e-21
Identities = 111/131 (84%)
Strand = Plus / Plus
Query: 334 aaggatgacctcaagctccctactgatgaggctctactttctcagataaaggatgggttt 393
||||||||||| ||||| ||||| ||||| ||||| ||| ||||| ||||| || |||
Sbjct: 260 aaggatgaccttaagcttcctaccgatgatgctctgcttaagcagatcaaggagggcttt 319
Query: 394 gctgagggtaaggaccttgttttgagcgttatgtctgcaatgggtgaggagcagatttgt 453
| ||| |||||||| || ||| |||| ||||||||||| ||||| |||||||||||||||
Sbjct: 320 ggtgatggtaaggatctggttgtgagtgttatgtctgccatgggggaggagcagatttgt 379
Query: 454 gccctgaagga 464
||||| |||||
Sbjct: 380 gcccttaagga 390
>gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translation initiation factor;
n=1; Carica papaya|Rep: Translation initiation factor -
Carica papaya (Papaya), partial (72%)
Length = 499
Score = 186 bits (94), Expect = 9e-47
Identities = 208/246 (84%)
Strand = Plus / Plus
Query: 153 taagcatggtcatgctaagtgccactttgttgcaattgatattttcactgccaaaaagct 212
|||||| ||||||||||| ||||||||||||| ||||||||| ||||||| | | || ||
Sbjct: 226 taagcacggtcatgctaactgccactttgttggaattgatatcttcactggcgacaatct 285
Query: 213 tgaggatattgttccctcttcccacaattgtgatgttcctcatgtgaatcgtactgacta 272
||| ||||||||||| ||||| || |||||||||||||||||||||| ||| ||||| ||
Sbjct: 286 tgacgatattgttccttcttctcataattgtgatgttcctcatgtgactcgaactgatta 345
Query: 273 ccagttgattgatattgctgaggatggatttctgagcctgcttactgaaaatgggaacac 332
| | | ||||||||| |||||||||||||| |||| || |||||||||| ||| ||
Sbjct: 346 caatctcattgatatttctgaggatggatttgtgagtcttcttactgaaagtggtggtac 405
Query: 333 caaggatgacctcaagctccctactgatgaggctctactttctcagataaaggatgggtt 392
||||||||| |||||||| ||||||||||| ||||| || |||| || ||||| || ||
Sbjct: 406 caaggatgatctcaagcttcctactgatgatgctctcctcactcatattaaggacggatt 465
Query: 393 tgctga 398
||||||
Sbjct: 466 tgctga 471
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 60
||||| |||||||||||||| ||| |||| |||||||||||| || || |||| |||||
Sbjct: 62 atgtctgacgaggagcaccatttctagtccaaggccgacgccagaaccaccaaaacctac 121
Query: 61 cctc 64
||||
Sbjct: 122 cctc 125
>gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (80%)
Length = 509
Score = 149 bits (75), Expect = 2e-35
Identities = 283/353 (80%)
Strand = Plus / Minus
Query: 118 tgcaaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccac 177
|||||||||||||| ||||| || || || || || |||||||| ||||| |||||||||
Sbjct: 487 tgcaaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccac 428
Query: 178 tttgttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccac 237
||||| || |||||| |||||| || | ||||||||| ||||||||||| || ||||||
Sbjct: 427 tttgtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccac 368
Query: 238 aattgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggat 297
|| ||||||||||| || |||||||| ||||| || ||| |||||||||| |||| |||
Sbjct: 367 aactgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagat 308
Query: 298 ggatttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctact 357
|| ||| |||| ||| | ||||| |||| ||||||||||| || ||||| || |||
Sbjct: 307 ggttttgtgagtctgttgactgacnatggaggtaccaaggatgatctgaagcttcccact 248
Query: 358 gatgaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttg 417
|||||| | || ||| ||||||| || ||||| ||| ||| || || || ||||| |
Sbjct: 247 gatgagacactgcttgctcagattaaagatggatttaatgaagggaaagatcttgtggtt 188
Query: 418 agcgttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgg 470
|| |||||||| ||||| || ||||| || |||||||||||||| |||||
Sbjct: 187 tctgtcatgtctgcnatgggagaagagcatatctgtgccctgaaggacattgg 135