Miyakogusa Predicted Gene
- Lj1g3v0525420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0525420.1 tr|A1YKE2|A1YKE2_BRASY Auxin efflux carrier
OS=Brachypodium sylvaticum GN=57h21.6 PE=4
SV=1,27.07,2e-18,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat; no
des,CUFF.25942.1
(1869 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58694 homologue to UniRef100_Q9SHF0 Cluster: T19E23.1... 1039 0.0
gnl|LJGI|FS346319 similar to UniRef100_A7PDJ4 Cluster: Chromosom... 979 0.0
gnl|LJGI|FS326911 similar to UniRef100_A7PRT7 Cluster: Chromosom... 54 3e-06
>gnl|LJGI|TC58694 homologue to UniRef100_Q9SHF0 Cluster: T19E23.10; n=1; Arabidopsis
thaliana|Rep: T19E23.10 - Arabidopsis thaliana
(Mouse-ear cress), partial (5%)
Length = 777
Score = 1039 bits (524), Expect = 0.0
Identities = 524/524 (100%)
Strand = Plus / Plus
Query: 196 tcacccaaaccccaccgcactgcatgcttctccctcttccacgccctcaccacctccaaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcacccaaaccccaccgcactgcatgcttctccctcttccacgccctcaccacctccaaa 313
Query: 256 cccacgccccacgccttcggcatcctcatactcgcattctcccaactgggtctcatcgat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccacgccccacgccttcggcatcctcatactcgcattctcccaactgggtctcatcgat 373
Query: 316 gaagccctctgggtccataaacagctcaacttcttgcccccgttacaagcttgcaacgcg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaagccctctgggtccataaacagctcaacttcttgcccccgttacaagcttgcaacgcg 433
Query: 376 cttcttcatggtttggtcaagacccagaagtttgattcagtctgggagctctacggtaac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttcttcatggtttggtcaagacccagaagtttgattcagtctgggagctctacggtaac 493
Query: 436 atggtggcacgcggattttcccctactgtgatcacctatgggattttgatggactgttgt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atggtggcacgcggattttcccctactgtgatcacctatgggattttgatggactgttgt 553
Query: 496 tgtaaccaaggtgattttggtaaggcacacaaggtgttcgatgaaatgcgtgagaggggg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgtaaccaaggtgattttggtaaggcacacaaggtgttcgatgaaatgcgtgagaggggg 613
Query: 556 attttgcctactgtggtggtttacactattctgattcgcgtgttttgctgcgagggtcgg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attttgcctactgtggtggtttacactattctgattcgcgtgttttgctgcgagggtcgg 673
Query: 616 atgggggatgctgaaagggtgttcaggttgatgagggagtctggggtggatgccaatttg 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgggggatgctgaaagggtgttcaggttgatgagggagtctggggtggatgccaatttg 733
Query: 676 tatacttataagactgtcatggatgggtatcgcaaggtgggtta 719
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tatacttataagactgtcatggatgggtatcgcaaggtgggtta 777
Score = 180 bits (91), Expect = 2e-44
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 atgtggaaccttgtccgtcggaaaatcatccccatcagttccattcccaaccgcatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atgtggaaccttgtccgtcggaaaatcatccccatcagttccattcccaaccgcatctcc 118
Query: 61 tcttattcttcacactctccctctcactccg 91
|||||||||||||||||||||||||||||||
Sbjct: 119 tcttattcttcacactctccctctcactccg 149
>gnl|LJGI|FS346319 similar to UniRef100_A7PDJ4 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 654
Score = 979 bits (494), Expect = 0.0
Identities = 494/494 (100%)
Strand = Plus / Minus
Query: 1376 tacacaaggagatgccggatgcaggacttgtacccaatgtgtttacggttagttgtttaa 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tacacaaggagatgccggatgcaggacttgtacccaatgtgtttacggttagttgtttaa 595
Query: 1436 ttgatagccttttcaaagatggaagaacatatgatgcaatcaaactgttcttggagaaaa 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttgatagccttttcaaagatggaagaacatatgatgcaatcaaactgttcttggagaaaa 535
Query: 1496 caggagttggttgccctggaggtaaaatggagagcagcttgtgttctccaaacgatgtga 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caggagttggttgccctggaggtaaaatggagagcagcttgtgttctccaaacgatgtga 475
Query: 1556 tgtatgccattttaattcaaggtttatgtaaagatggacagatctttaaggccaccaagt 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtatgccattttaattcaaggtttatgtaaagatggacagatctttaaggccaccaagt 415
Query: 1616 ttttcacagaaatgagatgcaagggtttcttaccagacagggctgtttatgttgccatgt 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttttcacagaaatgagatgcaagggtttcttaccagacagggctgtttatgttgccatgt 355
Query: 1676 tgcagggacattttcgattcaagcacatgcttgatgtaatgatgttgcatgcagacatac 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgcagggacattttcgattcaagcacatgcttgatgtaatgatgttgcatgcagacatac 295
Query: 1736 tgaagatgggtattatgctaaactctaccatatatcgtgtgttgtctaggggctatagag 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgaagatgggtattatgctaaactctaccatatatcgtgtgttgtctaggggctatagag 235
Query: 1796 agcgaggagatttgataccagctcgcatgtgttctgaacatctaatggaatatggcattg 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agcgaggagatttgataccagctcgcatgtgttctgaacatctaatggaatatggcattg 175
Query: 1856 catgtcctcaataa 1869
||||||||||||||
Sbjct: 174 catgtcctcaataa 161
>gnl|LJGI|FS326911 similar to UniRef100_A7PRT7 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 616
Score = 54.0 bits (27), Expect = 3e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 525 caaggtgttcgatgaaatgcgtgagag 551
|||||||||||||||||||||||||||
Sbjct: 522 caaggtgttcgatgaaatgcgtgagag 548