Miyakogusa Predicted Gene

Lj1g3v0416360.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0416360.1 tr|G8HRT1|G8HRT1_9HYME Long wavelength rhodopsin
(Fragment) OS=Ephedrus plagiator GN=LWRh PE=3
SV=1,35.38,5.2,seg,NULL,CUFF.25828.1
         (189 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BG662197                                                     123   4e-28
gnl|LJGI|TC79424 weakly similar to UniRef100_Q8SX98 Cluster: GH2...    80   5e-15

>gnl|LJGI|BG662197 
          Length = 310

 Score =  123 bits (62), Expect = 4e-28
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                       
Query: 90  gatgtcgtcccacgaagcttcaaatacaaaggagaaggnnnnnnnnnncttatgtctaca 149
           |||| |||||||||||||||||||||||||| ||||||          ||||||||||||
Sbjct: 100 gatgccgtcccacgaagcttcaaatacaaagaagaaggaaaaaaataacttatgtctaca 159

                                                   
Query: 150 agagaaagaaccagcaccgccgcatggaaaattgaattga 189
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agagaaagaaccagcaccgccgcatggaaaattgaattga 199



 Score = 85.7 bits (43), Expect = 9e-17
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                         
Query: 1  atgtttgttagatctgtggtggttgtgtttgtgagtatgtggtgtta 47
          |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 atgtttgttagatctgtgctggttgtgtttgtgagtatgtggtgtta 57


>gnl|LJGI|TC79424 weakly similar to UniRef100_Q8SX98 Cluster: GH25793p; n=1;
           Drosophila melanogaster|Rep: GH25793p - Drosophila
           melanogaster (Fruit fly), partial (3%)
          Length = 629

 Score = 79.8 bits (40), Expect = 5e-15
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 1   atgtttgttagatctgtggtggttgtgtttgtgagtatgtggtgtta 47
           |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 529 atgtttgttanatctgtggtggttgtgtttgtgaatatgtggtgtta 575