Miyakogusa Predicted Gene

Lj1g3v0318660.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0318660.1 tr|F2DSC4|F2DSC4_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,24.22,7e-18,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopept,CUFF.25563.1
         (1664 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS321847 weakly similar to UniRef100_A7PCT9 Cluster: Ch...  1076   0.0  
gnl|LJGI|FS348446 similar to UniRef100_A7PCT9 Cluster: Chromosom...   581   e-165

>gnl|LJGI|FS321847 weakly similar to UniRef100_A7PCT9 Cluster: Chromosome chr17
           scaffold_12, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (20%)
          Length = 742

 Score = 1076 bits (543), Expect = 0.0
 Identities = 543/543 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgactcagattcaatggctccattccgaactgagcaacgtttgcaagtcccttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgttgactcagattcaatggctccattccgaactgagcaacgtttgcaagtcccttttg 259

                                                                       
Query: 61  agagccaaacagttacatgcttgccttttgaagacccatctctcacaagaccccttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agagccaaacagttacatgcttgccttttgaagacccatctctcacaagaccccttttat 319

                                                                       
Query: 121 gcaactaaacttgtaagactctatgcagctaccaatgacatcaactctgcctaccatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcaactaaacttgtaagactctatgcagctaccaatgacatcaactctgcctaccatgtg 379

                                                                       
Query: 181 ttcgacaaaatgtccactcgaagtgtctacctttggaattccatgattcgagctttcgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcgacaaaatgtccactcgaagtgtctacctttggaattccatgattcgagctttcgcg 439

                                                                       
Query: 241 ttgtctcaaagatttgacaatgcagtttctctattcagaaccatgcttggtgctgacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtctcaaagatttgacaatgcagtttctctattcagaaccatgcttggtgctgacata 499

                                                                       
Query: 301 aaacctgacaattacacttttgcttgtgttatacgtgcttgcgctgataactttgattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacctgacaattacacttttgcttgtgttatacgtgcttgcgctgataactttgattta 559

                                                                       
Query: 361 ggtatgcttagacttgttcatggaggtgctgtagcttctgggttaggactggacgctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtatgcttagacttgttcatggaggtgctgtagcttctgggttaggactggacgctatt 619

                                                                       
Query: 421 tgttgcagtgcacttgtgagtgcttattcaaaactaggccttgttcatgaagctaataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttgcagtgcacttgtgagtgcttattcaaaactaggccttgttcatgaagctaataga 679

                                                                       
Query: 481 gtgttcaatgggattgctgaaccggatttggttttgtggaactcactgatttctggttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgttcaatgggattgctgaaccggatttggttttgtggaactcactgatttctggttat 739

              
Query: 541 ggg 543
           |||
Sbjct: 740 ggg 742


>gnl|LJGI|FS348446 similar to UniRef100_A7PCT9 Cluster: Chromosome chr17 scaffold_12,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr17 scaffold_12, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (10%)
          Length = 736

 Score =  581 bits (293), Expect = e-165
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1372 gagttagaagaggcttacaatctcactcagtccttaccagaaccagtagacaaggccatc 1431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gagttagaagaggcttacaatctcactcagtccttaccagaaccagtagacaaggccatc 677

                                                                        
Query: 1432 ctgggagccttgttatcatgctgtaattcctgtggaaattctgagctagcagaaactgta 1491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  ctgggagccttgttatcatgctgtaattcctgtggaaattctgagctagcagaaactgta 617

                                                                        
Query: 1492 gctcagaagctttttcaaaataatcctgctgataatgctttcaaggttatgctttctaat 1551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  gctcagaagctttttcaaaataatcctgctgataatgctttcaaggttatgctttctaat 557

                                                                        
Query: 1552 atatatgctggtgatgggaggtgggatgatgtgaagaatttgagggataaaatgacagga 1611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  atatatgctggtgatgggaggtgggatgatgtgaagaatttgagggataaaatgacagga 497

                                                                 
Query: 1612 ggactgagaaaaatgcccgggctaagctggattgaaggaagttattgctaatt 1664
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  ggactgagaaaaatgcccgggctaagctggattgaaggaagttattgctaatt 444