Miyakogusa Predicted Gene
- Lj1g3v0318630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0318630.1 tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase
OS=Medicago truncatula GN=MTR_3g077160 PE=3
SV=1,81.9,0,Arginase/deacetylase,NULL; Hist_deacetyl,Histone
deacetylase domain; HISTONE DEACETYLASE,NULL; HISTO,CUFF.25565.1
(1401 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59692 similar to UniRef100_A7PCT8 Cluster: Chromosome... 1388 0.0
gnl|LJGI|TC79913 similar to UniRef100_Q9FML2 Cluster: Histone de... 722 0.0
gnl|LJGI|TC59998 homologue to UniRef100_A7PCT8 Cluster: Chromoso... 278 9e-74
gnl|LJGI|TC72571 268 9e-71
gnl|LJGI|TC67123 similar to UniRef100_Q9ZTP8 Cluster: Histone de... 178 6e-44
gnl|LJGI|TC74024 similar to UniRef100_Q0DU04 Cluster: Os03g02142... 78 2e-13
>gnl|LJGI|TC59692 similar to UniRef100_A7PCT8 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (68%)
Length = 816
Score = 1388 bits (700), Expect = 0.0
Identities = 700/700 (100%)
Strand = Plus / Plus
Query: 1 atggcggagagtgacggtggcgcttcgctaccgtcggtgggtagcgacgccgtgaagcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atggcggagagtgacggtggcgcttcgctaccgtcggtgggtagcgacgccgtgaagcgg 176
Query: 61 agtgtgacctatttctacgaaccccaaatcggcgactactactacggccaaggccaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agtgtgacctatttctacgaaccccaaatcggcgactactactacggccaaggccaccca 236
Query: 121 atgaaaccgcacagaatccgcatggcgcacgagctcatcatcaactactccctcttccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atgaaaccgcacagaatccgcatggcgcacgagctcatcatcaactactccctcttccgc 296
Query: 181 cgcatgcagatcaaccgtccataccccgccgccgtcgaggacatctgccgctttcactcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cgcatgcagatcaaccgtccataccccgccgccgtcgaggacatctgccgctttcactcc 356
Query: 241 gacgactacgtcgacttcctcgcctccgtctcgccggaaatcctctccgagcccacccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gacgactacgtcgacttcctcgcctccgtctcgccggaaatcctctccgagcccacccac 416
Query: 301 tctcactaccgccagctcaagcgctacaacgtcggtgaggactgtcctgttttcgacgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tctcactaccgccagctcaagcgctacaacgtcggtgaggactgtcctgttttcgacgga 476
Query: 361 ctcttcgatttctgccaggcttccgccggtggatccatcggcgccgccgtcacgctcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctcttcgatttctgccaggcttccgccggtggatccatcggcgccgccgtcacgctcaac 536
Query: 421 cactccctcgccgacatcgcgatcaactgggccggtggcttgcaccatgcgaagaaggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cactccctcgccgacatcgcgatcaactgggccggtggcttgcaccatgcgaagaaggct 596
Query: 481 gaggcctctgggttttgctacgtcaatgacatcgtcctgggaattctcgagcttctcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaggcctctgggttttgctacgtcaatgacatcgtcctgggaattctcgagcttctcaag 656
Query: 541 gttcacaggcgtgtgctgtatgttgatattgatgttcaccatggagatggcgttgaggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gttcacaggcgtgtgctgtatgttgatattgatgttcaccatggagatggcgttgaggag 716
Query: 601 gcattctacactactgatagagtgatgacagtgtcatttcacaagttcgggaattttttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gcattctacactactgatagagtgatgacagtgtcatttcacaagttcgggaattttttc 776
Query: 661 ccaggaactgggcacatcaaggacactgggctgggtcctg 700
||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ccaggaactgggcacatcaaggacactgggctgggtcctg 816
>gnl|LJGI|TC79913 similar to UniRef100_Q9FML2 Cluster: Histone deacetylase 6; n=1;
Arabidopsis thaliana|Rep: Histone deacetylase 6 -
Arabidopsis thaliana (Mouse-ear cress), partial (24%)
Length = 366
Score = 722 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Plus
Query: 858 gggctgcttcaacttgtctgtgaagggtcatgcagattgccttcgcttccttagatctta 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggctgcttcaacttgtctgtgaagggtcatgcagattgccttcgcttccttagatctta 62
Query: 918 caatgtccctctaatgctcttgggtgggggaggatacacggtccggagcgttgctcgatg 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 caatgtccctctaatgctcttgggtgggggaggatacacggtccggagcgttgctcgatg 122
Query: 978 ctggtgttatgagactgcggtggcagtaggagtggagctgagtaataagttgccattcaa 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctggtgttatgagactgcggtggcagtaggagtggagctgagtaataagttgccattcaa 182
Query: 1038 tcaatattatgaattttttggccctgagtatacacttcatgtcagccctagaagcatggc 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcaatattatgaattttttggccctgagtatacacttcatgtcagccctagaagcatggc 242
Query: 1098 gaacctaaacacaccccaggatttggaactgattaggaatctgttgcttgagcaaatttc 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaacctaaacacaccccaggatttggaactgattaggaatctgttgcttgagcaaatttc 302
Query: 1158 cagactcccccatgctcccagcataccttttcagacaacaccgtcaaccatagaagttcc 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagactcccccatgctcccagcataccttttcagacaacaccgtcaaccatagaagttcc 362
Query: 1218 agaa 1221
||||
Sbjct: 363 agaa 366
>gnl|LJGI|TC59998 homologue to UniRef100_A7PCT8 Cluster: Chromosome chr17
scaffold_12, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (64%)
Length = 774
Score = 278 bits (140), Expect = 9e-74
Identities = 499/619 (80%), Gaps = 6/619 (0%)
Strand = Plus / Plus
Query: 67 acctatttctacgaaccccaaatcggcgactactactacggccaaggccacccaatgaaa 126
||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 150 acctacttctacgaaccatcgatcggcgattactactacggccaaggccacccgatgaaa 209
Query: 127 ccgcacagaatccgcatggcgcacgagctcatcatcaactactccctcttccgccgcatg 186
|| ||| | || || ||||| ||| | |||||| || | ||||||||| ||||||||||
Sbjct: 210 ccccaccggatgcgtatggcccacaatctcatcgtccattactccctccaccgccgcatg 269
Query: 187 cagatcaaccgtccataccccgccgccgtcgaggacatctgccgctttcactccgacgac 246
||||||| || || | |||||||| | || |||||| ||||||| ||||||||||||
Sbjct: 270 gagatcaatcgccccttccccgccggccctgacgacatccgccgcttccactccgacgac 329
Query: 247 tacgtcgacttcctcgcctccgtctcgccggaaatcctctccgagcccacccactctcac 306
|||||||| || || ||||| ||| | || || | ||||| ||||| | | | |
Sbjct: 330 tacgtcgagtttcttgcctctgtcacccctgagactctctcggagccaatcttcgc---- 385
Query: 307 taccgccagctcaagcgctacaacgtcggtgaggactgtcctgttttcgacggactcttc 366
||||||||| ||||||| |||||| |||||||| |||||| |||| || || || |||
Sbjct: 386 --ccgccagcttaagcgcttcaacgttggtgaggattgtcctatttttgatggtcttttc 443
Query: 367 gatttctgccaggcttccgccggtggatccatcggcgccgccgtcacgctcaaccactcc 426
||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||||| |
Sbjct: 444 aattactgccaggcctccgccggtggctccctcggcgccgccgtcaagctcaaccgcggt 503
Query: 427 ctcgccgacatcgcgatcaactgggccggtggcttgcaccatgcgaagaaggctgaggcc 486
|| ||||| || ||||| ||||| || ||| |||| ||||| |||||| ||| ||
Sbjct: 504 gaggctgacattgctatcaattgggctgggggcatgcatcatgctaagaagtgtgaagct 563
Query: 487 tctgggttttgctacgtcaatgacatcgtcctgggaattctcgagcttctcaaggttcac 546
||||| || || || ||||||||||| || || || || |||||||||||||| |||||
Sbjct: 564 tctggcttctgttatgtcaatgacattgtgcttggtatcctcgagcttctcaaagttcat 623
Query: 547 aggcgtgtgctgtatgttgatattgatgttcaccatggagatggcgttgaggaggcattc 606
|||||||||||||| |||| || |||||||||||||| ||||| || || ||||| |||
Sbjct: 624 aggcgtgtgctgtacattgacatagatgttcaccatggtgatggtgtggaagaggccttc 683
Query: 607 tacactactgatagagtgatgacagtgtcatttcacaagttcgggaattttttcccagga 666
||||| |||||||||||||||||||| || || || ||||| ||| | |||||||| ||
Sbjct: 684 tacacaactgatagagtgatgacagtatctttccataagtttggggactttttccccggc 743
Query: 667 actgggcacatcaaggaca 685
||||| |||||||||||||
Sbjct: 744 actggacacatcaaggaca 762
>gnl|LJGI|TC72571
Length = 623
Score = 268 bits (135), Expect = 9e-71
Identities = 146/149 (97%), Gaps = 3/149 (2%)
Strand = Plus / Plus
Query: 1256 gtcgcatatggagcagtggagaagttgattctgactatgaagatgaggcacctagtccac 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcgcatatggagcagtggagaagttgattctgactatgaagatgaggcacctagtccac 60
Query: 1316 cgaactcacattcaacatccaatata---aggcatctggcagatgagatggaagatgatg 1372
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cgaactcacattcaacatccaatataagcaggcatctggcagatgagatggaagatgatg 120
Query: 1373 actcggatgcgactccatcaccttaatac 1401
|||||||||||||||||||||||||||||
Sbjct: 121 actcggatgcgactccatcaccttaatac 149
>gnl|LJGI|TC67123 similar to UniRef100_Q9ZTP8 Cluster: Histone deacetylase; n=2; Zea
mays|Rep: Histone deacetylase - Zea mays (Maize), partial
(27%)
Length = 927
Score = 178 bits (90), Expect = 6e-44
Identities = 302/370 (81%), Gaps = 2/370 (0%)
Strand = Plus / Plus
Query: 883 ggtcatgcagattgccttcgcttccttagatcttacaatgtccctctaatgctcttgggt 942
|||||||||||||||||||| ||| ||| ||||| |||||| ||||||||| | | |||
Sbjct: 5 ggtcatgcagattgccttcgtttcgttaaatctttcaatgttcctctaatgattgttggt 64
Query: 943 gggggaggatacacggtccggagcgttgctcgatgctggtgttatgagactgcggtggca 1002
|| |||||||| ||| | |||| || ||||| || ||||||||||||||||| || |||
Sbjct: 65 ggcggaggatatacgattcggaatgtggctcgttgttggtgttatgagactgcagtagca 124
Query: 1003 gtaggagtggag-ctgagtaataagttgccattcaatcaatattatgaattttttggccc 1061
|||||||||||| |||| ||| ||| |||| | |||| |||| ||||| | |||||||||
Sbjct: 125 gtaggagtggagcctga-taacaagctgccttacaatgaatactatgagtattttggccc 183
Query: 1062 tgagtatacacttcatgtcagccctagaagcatggcgaacctaaacacaccccaggattt 1121
|| ||||| || ||||| || || | ||||| |||||||||||||||| |||||||
Sbjct: 184 agattatactctccatgttgatccaagcaacatggagaacctaaacacacccaaggattt 243
Query: 1122 ggaactgattaggaatctgttgcttgagcaaatttccagactcccccatgctcccagcat 1181
|||| || ||||| || || || || |||||| |||| ||||||||||||||
Sbjct: 244 ggaaagaataaggaacactttactagaacagatttcccgacttccccatgctcccagtgc 303
Query: 1182 accttttcagacaacaccgtcaaccatagaagttccagaagaggaagaggaggacatgga 1241
|||||||||||||||||| ||||||| |||||| ||||| ||||| || |||| ||||||
Sbjct: 304 accttttcagacaacaccatcaaccacagaagtgccagaggaggaggaagagggcatgga 363
Query: 1242 tacaagacca 1251
|| |||||||
Sbjct: 364 tagaagacca 373
>gnl|LJGI|TC74024 similar to UniRef100_Q0DU04 Cluster: Os03g0214200 protein; n=1; Oryza
sativa Japonica Group|Rep: Os03g0214200 protein - Oryza
sativa subsp. japonica (Rice), partial (31%)
Length = 462
Score = 77.8 bits (39), Expect = 2e-13
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1022 ataagttgccattcaatcaatattatgaattttttggcc 1060
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ataagttgccattcaatcaatattatgaattttttggcc 44