Miyakogusa Predicted Gene

Lj1g3v0294720.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0294720.2 Non Chatacterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.08,0.00000000000003,RNAse_H_YqgF: RNAse H domain protein,
YqgF family,Resolvase, holliday junction-type, YqgF-like;
Ribo,CUFF.25517.2
         (597 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV426991 similar to UniRef100_A0GYV0 Cluster: Undecapre...   206   1e-52
gnl|LJGI|TC81282 similar to UniRef100_A7PKJ1 Cluster: Chromosome...    90   2e-17

>gnl|LJGI|AV426991 similar to UniRef100_A0GYV0 Cluster: Undecaprenyl-phosphate
           galactosephosphotransferase; n=1; Chloroflexus aggregans
           DSM 9485|Rep: Undecaprenyl-phosphate
           galactosephosphotransferase - Chloroflexus aggregans DSM
           9485, partial (4%)
          Length = 401

 Score =  206 bits (104), Expect = 1e-52
 Identities = 139/153 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggacgcagcaactgctacaggcaccaccaccccagaacctcttcctctgttgttca 60
           ||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct: 249 atgtggacgaagcaactgctacaggcaccaccaccccataatctcttcctatgttgttca 308

                                                                       
Query: 61  gctccgagtgttccnnnnnnnccatcttttgtgaaactgtgtccgacccagaatgccaaa 120
           ||||||||||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctccgagtgttccaaaaaaaccatcttttgtgaaactgtgtccgacccagaatgccaaa 368

                                            
Query: 121 agtcactacaacagagtaaagccaatctctttg 153
           | ||||||||||||||| ||| |||||||||||
Sbjct: 369 aatcactacaacagagttaaggcaatctctttg 401


>gnl|LJGI|TC81282 similar to UniRef100_A7PKJ1 Cluster: Chromosome chr15 scaffold_19,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_19, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 440

 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                            
Query: 549 tgcctatgctgccatgatggtactggagagatatttctccacgtcgggt 597
           |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1   tgcctatgctgccatgatggtactggagagatatttctccacttcgggt 49