Miyakogusa Predicted Gene

Lj1g3v0268490.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0268490.1 Non Chatacterized Hit- tr|I3M3B5|I3M3B5_SPETR
Uncharacterized protein OS=Spermophilus
tridecemlineat,35.35,0.000000000008,FYVE/PHD zinc finger,Zinc finger,
FYVE/PHD-type; ZF_PHD_2,Zinc finger, PHD-finger; ZF_RING_2,Zinc
fi,CUFF.25438.1
         (1950 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP048723 weakly similar to UniRef100_Q235Z4 Cluster: Pr...   303   2e-81

>gnl|LJGI|BP048723 weakly similar to UniRef100_Q235Z4 Cluster: Protein kinase domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: Protein kinase domain containing protein -
            Tetrahymena thermophila SB210, partial (5%)
          Length = 487

 Score =  303 bits (153), Expect = 2e-81
 Identities = 171/177 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1774 gaggcaagaaaggcatatgagactaacaattcgagatctgatgaaaatgtttcaaagcta 1833
            ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 487  gaggccagaaaggcatatgagactaaccattcgagatctgatgaaaatgtttcaaagcta 428

                                                                        
Query: 1834 aatgatgataagaaatggaacaataaacaaggaaaagaattggataaagttggaggaatg 1893
            ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 427  aatgatgataagaaatggaaccataaaccaggaaaagaattggataaagttggaggaatg 368

                                                                     
Query: 1894 gacatgcttttaactgctgccaatactctgaaatttgaggagggtcatacagattaa 1950
            ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 367  gacatgcttttaactgctgcccatactctgaaatttgaggagggtcataccgattaa 311