Miyakogusa Predicted Gene
- Lj1g3v0203190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0203190.1 Non Chatacterized Hit- tr|Q84P89|Q84P89_ORYSJ
Putative uncharacterized protein (Fragment) OS=Oryza
s,41.98,2e-19,coiled-coil,NULL; seg,NULL,CUFF.25346.1
(438 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73528 similar to UniRef100_A7NUP0 Cluster: Chromosome... 852 0.0
gnl|LJGI|TC75999 similar to UniRef100_A7NUP0 Cluster: Chromosome... 54 7e-07
>gnl|LJGI|TC73528 similar to UniRef100_A7NUP0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (67%)
Length = 1121
Score = 852 bits (430), Expect = 0.0
Identities = 436/438 (99%)
Strand = Plus / Plus
Query: 1 atggatgctgttgttgttggagtatccgatccggtggacccggttcgggtgaagaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atggatgctgttgttgttggagtatccgatccggtggacccggttcgggtgaagaggaag 318
Query: 61 acccttcaggctgtgctggaacagtgccagagagcccttgagctcatcaacaacgcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acccttcaggctgtgctggaacagtgccagagagcccttgagctcatcaacaacgcttcc 378
Query: 121 gatgatgacaacgacgacgtttcgggttcctccgatgattccaccccttctacgagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgatgacaacgacgacgtttcgggttcctccgatgattccaccccttctacgagacct 438
Query: 181 gatccagaaaccgatcagttgtgtgacctgctcaaatctagagttgagtgccctgacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gatccagaaaccgatcagttgtgtgacctgctcaaatctagagttgagtgccctgacttt 498
Query: 241 cttcagaagttagagtgtgctcaagcatcggttttgctgaacgcagctgaagaaggtaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttcagaagttagagtgtgctcaagcatcggttttgctgaacgcagctgaagaaggtaac 558
Query: 301 tcttgggatttggtcagtgaaaatgatctttgggaaggttctgagttagaccaagaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttgggatttggtcagtgaaaatgatctttgggaaggttctgagttagaccaagaagat 618
Query: 361 tttgttcttgttagacaagaagatatagtggagggaattgcttgcttcctggctgcatat 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 tttgttcttgttagacaagaagatatagtggagggaattgcttgcttcatggctgcatat 678
Query: 421 ttattgtccctttagcaa 438
|||||||||||| |||||
Sbjct: 679 ttattgtcccttaagcaa 696
>gnl|LJGI|TC75999 similar to UniRef100_A7NUP0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 534
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 402 ttgcttcctggctgcatatttattgtccctt 432
||||||| |||||||||||||||||||||||
Sbjct: 1 ttgcttcatggctgcatatttattgtccctt 31