Miyakogusa Predicted Gene

Lj1g3v0180960.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0180960.1 tr|I3S8P2|I3S8P2_LOTJA Transcription initiation
factor IIA subunit 2 OS=Lotus japonicus PE=3
SV=1,100,1.4013e-45,Transcription factor IIA (TFIIA), alpha-helical
domain,Transcription factor IIA, helical; Transcript,CUFF.25338.1
         (267 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63741 similar to UniRef100_Q1EMR2 Cluster: Transcript...   529   e-150
gnl|LJGI|BP057757                                                     176   4e-44

>gnl|LJGI|TC63741 similar to UniRef100_Q1EMR2 Cluster: Transcription initiation
           factor; n=1; Plantago major|Rep: Transcription
           initiation factor - Plantago major (Common plantain),
           partial (93%)
          Length = 698

 Score =  529 bits (267), Expect = e-150
 Identities = 267/267 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgacgtttgaactgtaccgaaggtcgacgatcggaatgtgcctcacggagactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atggcgacgtttgaactgtaccgaaggtcgacgatcggaatgtgcctcacggagactttg 205

                                                                       
Query: 61  gatgagatggttcagaatggtactctcagccctgagcttgcgattcaggttctggttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gatgagatggttcagaatggtactctcagccctgagcttgcgattcaggttctggttcag 265

                                                                       
Query: 121 ttcgataagtctatgactgaggctctggaaactcaagttaagagcaaggtctcgatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcgataagtctatgactgaggctctggaaactcaagttaagagcaaggtctcgatcaag 325

                                                                       
Query: 181 ggacatctccatacatataggttttgtgacaatgtttggactttcatcttacaagatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggacatctccatacatataggttttgtgacaatgtttggactttcatcttacaagatgct 385

                                      
Query: 241 ttgttcaagaatgaggacaaccaggag 267
           |||||||||||||||||||||||||||
Sbjct: 386 ttgttcaagaatgaggacaaccaggag 412


>gnl|LJGI|BP057757 
          Length = 510

 Score =  176 bits (89), Expect = 4e-44
 Identities = 89/89 (100%)
 Strand = Plus / Minus

                                                                       
Query: 179 agggacatctccatacatataggttttgtgacaatgtttggactttcatcttacaagatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agggacatctccatacatataggttttgtgacaatgtttggactttcatcttacaagatg 318

                                        
Query: 239 ctttgttcaagaatgaggacaaccaggag 267
           |||||||||||||||||||||||||||||
Sbjct: 317 ctttgttcaagaatgaggacaaccaggag 289