Miyakogusa Predicted Gene
- Lj1g3v0173680.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0173680.2 tr|G7K5Z4|G7K5Z4_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_5g067060 PE=3
S,91.77,0,PLP-dependent transferases,Pyridoxal phosphate-dependent
transferase, major domain; SUBFAMILY NOT NA,CUFF.25317.2
(729 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine h... 1273 0.0
gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster: Serine-h... 341 4e-93
gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitocho... 64 1e-09
>gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine
hydroxymethyltransferase; n=1; Medicago truncatula|Rep:
Serine hydroxymethyltransferase - Medicago truncatula
(Barrel medic), partial (46%)
Length = 1012
Score = 1273 bits (642), Expect = 0.0
Identities = 645/646 (99%)
Strand = Plus / Plus
Query: 84 aaccacaacacataagtcacttcgtggaccacgtggggctatgatcttcttcaggaaggg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aaccacaacacataagtcacttcgtggaccacgtggggctatgatcttcttcaggaaggg 64
Query: 144 tgtgaaggaaataaacaagaaagggcaggaagtgttgtatgactacgaagacaaaataaa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgtgaaggaaataaacaagaaagggcaggaagtgttgtatgactacgaagacaaaataaa 124
Query: 204 tcaggctgtttttcctggacttcaaggtggtcctcacaatcacactattacaggcttggc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcaggctgtttttcctggacttcaaggtggtcctcacaatcacactattacaggcttggc 184
Query: 264 agttgcactgaagcaggctatgacgccagaattcaagaattaccaaaaacaagtgcttag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agttgcactgaagcaggctatgacgccagaattcaagaattaccaaaaacaagtgcttag 244
Query: 324 taactcctcggcttttgcacagagtttgatagagaaaggctatgaacttgtatctggtgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taactcctcggcttttgcacagagtttgatagagaaaggctatgaacttgtatctggtgg 304
Query: 384 aactgaaaaccatttagtgttggtgaacttaagaaacaagggcatcgatggctcaagggt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aactgaaaaccatttagtgttggtgaacttaagaaacaagggcatcgatggctcaagggt 364
Query: 444 tgaaaaggtgttagaatcagttcatatagctgccaataaaaatactgttccgggggatgt 503
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 tgaaaaggtgttagaatcagttcatatagctgccaataaaaatactgttccaggggatgt 424
Query: 504 gtctgctatgattcccggaggcatccgaatgggaacccctgctctcacatccaggggttt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtctgctatgattcccggaggcatccgaatgggaacccctgctctcacatccaggggttt 484
Query: 564 cattgaggaggattttagaaaagtagctgaatactttgacgctgcagtcaagatagcctt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cattgaggaggattttagaaaagtagctgaatactttgacgctgcagtcaagatagcctt 544
Query: 624 gcagattaagggaaacgctaaaggtacaaagttgaaggattttgtggaagctatgcagtt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcagattaagggaaacgctaaaggtacaaagttgaaggattttgtggaagctatgcagtt 604
Query: 684 ggatgaagaaattcaatctaagattgctaaggtccgtcatgaagta 729
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggatgaagaaattcaatctaagattgctaaggtccgtcatgaagta 650
>gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster:
Serine-hydroxymethyltransferase; n=1; Medicago
truncatula|Rep: Serine-hydroxymethyltransferase -
Medicago truncatula (Barrel medic), complete
Length = 1787
Score = 341 bits (172), Expect = 4e-93
Identities = 482/580 (83%), Gaps = 4/580 (0%)
Strand = Plus / Plus
Query: 2 tgttggctgatatggcacacatcagtgggttggttgctgcaggtgttattccttctcctt 61
||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 794 tgttggcagatatggcacacattagtggattggttgctgctggtgttatcccttcacctt 853
Query: 62 ttgattatgcagatgttgtaacaaccacaacacataagtcacttcgtggaccacgtgggg 121
||||||||||||||||||| || |||||||| || ||||||||||||||||| |||||||
Sbjct: 854 ttgattatgcagatgttgtgactaccacaacccacaagtcacttcgtggaccccgtgggg 913
Query: 122 ctatgatcttcttcaggaagggtgtgaaggaaataaacaagaaagggcaggaagtgttgt 181
|||||||||||||||||||||| ||||| ||||| ||||| |||| |||| ||| |||
Sbjct: 914 ctatgatcttcttcaggaagggggtgaaagaaatcaacaaacaaggaaaggaggtgctgt 973
Query: 182 atgactacgaagacaaaataaatcaggctgtttttcctggacttcaaggtggtcctcaca 241
||||||| || |||||||| || || || ||||| || ||||| ||||| ||||||||||
Sbjct: 974 atgactatgaggacaaaatcaaccaagccgttttcccaggactgcaagggggtcctcaca 1033
Query: 242 atcacactattacaggcttggcagttgcactgaagcaggctatgacgccagaat-tcaag 300
| || || ||||| || || || |||||| |||||||||||| || ||||| | | |||
Sbjct: 1034 accatacaattactggtttagctgttgcattgaagcaggctacaactccagagtataaag 1093
Query: 301 aattaccaaaaacaagtgcttagtaactcctcggcttttgcacagagtttgatagagaaa 360
| || ||| | || || || ||||| | ||| ||||||||| | ||| ||||
Sbjct: 1094 ca-tatcaagagcaggttctcagtaattgctcaaaatttgcacaggctctgagtgagagg 1152
Query: 361 ggctatgaacttgtatctggtggaactgaaaaccatttagtgttggtgaa-cttaagaaa 419
|||||||| ||||| || ||||||||||| || ||| |||| |||||||| || ||| ||
Sbjct: 1153 ggctatgagcttgtttccggtggaactgagaatcatctagttttggtgaatctgaag-aa 1211
Query: 420 caagggcatcgatggctcaagggttgaaaaggtgttagaatcagttcatatagctgccaa 479
|||||| || |||||||| || ||||| |||||||| ||||||||||| || || || ||
Sbjct: 1212 caagggtattgatggctccagagttgagaaggtgttggaatcagttcacattgcagcaaa 1271
Query: 480 taaaaatactgttccgggggatgtgtctgctatgattcccggaggcatccgaatgggaac 539
|||||| || |||||||| ||||||||||||||| |||| || |||||||| ||||||||
Sbjct: 1272 taaaaacaccgttccgggagatgtgtctgctatggttcctggtggcatccggatgggaac 1331
Query: 540 ccctgctctcacatccaggggtttcattgaggaggatttt 579
|||||||| || || ||||| ||| ||||||||||||||
Sbjct: 1332 tcctgctcttacttctaggggattcgttgaggaggatttt 1371
>gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitochondrial serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Mitochondrial serine hydroxymethyltransferase - Populus
tremuloides (Quaking aspen), partial (46%)
Length = 804
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 atgttggctgatatggcacacatcagtgggtt 32
||||||||||||||||||||||||||||||||
Sbjct: 773 atgttggctgatatggcacacatcagtgggtt 804