Miyakogusa Predicted Gene
- Lj1g3v0173680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0173680.1 tr|G7K5Z4|G7K5Z4_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_5g067060 PE=3
S,89.89,0,no description,Pyridoxal phosphate-dependent transferase,
major region, subdomain 1; no description,,CUFF.25317.1
(1335 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitocho... 1511 0.0
gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine h... 890 0.0
gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster: Serine-h... 581 e-165
gnl|LJGI|TC77069 similar to UniRef100_P34899 Cluster: Serine hyd... 184 1e-45
>gnl|LJGI|FS340433 homologue to UniRef100_A9PL06 Cluster: Mitochondrial serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Mitochondrial serine hydroxymethyltransferase - Populus
tremuloides (Quaking aspen), partial (46%)
Length = 804
Score = 1511 bits (762), Expect = 0.0
Identities = 768/770 (99%)
Strand = Plus / Plus
Query: 1 atggccatggctctccgccgcctctcctccaccttcaccaaaccacccaccgcctcttct 60
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 35 atggccatggctctccgccgactctcctccaccttcaccaaaccaaccaccgcctcttct 94
Query: 61 gtttaccgcatgtcctcttccctccccgcgctcgacaatgacaaatctcgcgccgattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gtttaccgcatgtcctcttccctccccgcgctcgacaatgacaaatctcgcgccgattgg 154
Query: 121 ataaagcagctcaatgatcctctggaaaccatagatcctgagatcgctgacataatcgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ataaagcagctcaatgatcctctggaaaccatagatcctgagatcgctgacataatcgaa 214
Query: 181 ctcgagaaagctcgtcaatggaagggattggaacttataccttcggagaatttcacgtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctcgagaaagctcgtcaatggaagggattggaacttataccttcggagaatttcacgtcg 274
Query: 241 ctgtcggtgatgcaagctgttggatcggtgatgacgaataaatacagtgaagggtatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgtcggtgatgcaagctgttggatcggtgatgacgaataaatacagtgaagggtatcct 334
Query: 301 ggtgctagatactatggaggaaatgagtacattgacatggccgagaccttgtgtcagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggtgctagatactatggaggaaatgagtacattgacatggccgagaccttgtgtcagaag 394
Query: 361 cgtgcacttgaagcttttgggttggatccagcaaaatggggagtcaatgtgcagtcgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgtgcacttgaagcttttgggttggatccagcaaaatggggagtcaatgtgcagtcgttg 454
Query: 421 tctggttccccttctaacttccaagtttacactgctttattgaaacctcatgaaagaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctggttccccttctaacttccaagtttacactgctttattgaaacctcatgaaagaatt 514
Query: 481 atggcactcgatcttccccatggtgggcatctatcacatggctatcagactgacaccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atggcactcgatcttccccatggtgggcatctatcacatggctatcagactgacaccaag 574
Query: 541 aagatatcagctgtatcgatattctttgaaacaatgccgtacagattgaatgagactact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagatatcagctgtatcgatattctttgaaacaatgccgtacagattgaatgagactact 634
Query: 601 ggttatattgattatgaccagatggagaaaagtgctgcactttttaggccaaagttaatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggttatattgattatgaccagatggagaaaagtgctgcactttttaggccaaagttaatt 694
Query: 661 gtcgctggtgctagtgcttatgctcgcctttatgattatgaacgtattcgtaaggtctgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtcgctggtgctagtgcttatgctcgcctttatgattatgaacgtattcgtaaggtctgt 754
Query: 721 gataaacagaaggcagtaatgttggctgatatggcacacatcagtgggtt 770
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gataaacagaaggcagtaatgttggctgatatggcacacatcagtgggtt 804
>gnl|LJGI|TC64633 homologue to UniRef100_Q45FE6 Cluster: Serine
hydroxymethyltransferase; n=1; Medicago truncatula|Rep:
Serine hydroxymethyltransferase - Medicago truncatula
(Barrel medic), partial (46%)
Length = 1012
Score = 890 bits (449), Expect = 0.0
Identities = 452/453 (99%)
Strand = Plus / Plus
Query: 822 aaccacaacacataagtcacttcgtggaccacgtggggctatgatcttcttcaggaaggg 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aaccacaacacataagtcacttcgtggaccacgtggggctatgatcttcttcaggaaggg 64
Query: 882 tgtgaaggaaataaacaagaaagggcaggaagtgttgtatgactacgaagacaaaataaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgtgaaggaaataaacaagaaagggcaggaagtgttgtatgactacgaagacaaaataaa 124
Query: 942 tcaggctgtttttcctggacttcaaggtggtcctcacaatcacactattacaggcttggc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcaggctgtttttcctggacttcaaggtggtcctcacaatcacactattacaggcttggc 184
Query: 1002 agttgcactgaagcaggctatgacgccagaattcaagaattaccaaaaacaagtgcttag 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agttgcactgaagcaggctatgacgccagaattcaagaattaccaaaaacaagtgcttag 244
Query: 1062 taactcctcggcttttgcacagagtttgatagagaaaggctatgaacttgtatctggtgg 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taactcctcggcttttgcacagagtttgatagagaaaggctatgaacttgtatctggtgg 304
Query: 1122 aactgaaaaccatttagtgttggtgaacttaagaaacaagggcatcgatggctcaagggt 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aactgaaaaccatttagtgttggtgaacttaagaaacaagggcatcgatggctcaagggt 364
Query: 1182 tgaaaaggtgttagaatcagttcatatagctgccaataaaaatactgttccgggggatgt 1241
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 tgaaaaggtgttagaatcagttcatatagctgccaataaaaatactgttccaggggatgt 424
Query: 1242 gtctgctatgattcccggaggcatccgaatggg 1274
|||||||||||||||||||||||||||||||||
Sbjct: 425 gtctgctatgattcccggaggcatccgaatggg 457
>gnl|LJGI|TC59359 homologue to UniRef100_A9YWS0 Cluster:
Serine-hydroxymethyltransferase; n=1; Medicago
truncatula|Rep: Serine-hydroxymethyltransferase -
Medicago truncatula (Barrel medic), complete
Length = 1787
Score = 581 bits (293), Expect = e-165
Identities = 898/1093 (82%), Gaps = 5/1093 (0%)
Strand = Plus / Plus
Query: 184 gagaaagctcgtcaatggaagggattggaacttataccttcggagaatttcacgtcgctg 243
||||||||| | ||||||||||| |||| || ||||| || ||||||||||| || ||
Sbjct: 239 gagaaagctagacaatggaaggggctggagctgataccctcagagaatttcacttctctc 298
Query: 244 tcggtgatgcaagctgttggatcggtgatgacgaataaatacagtgaagggtatcctggt 303
|| || |||||||||||||| || || ||||| || |||||||||||||| ||||| |||
Sbjct: 299 tctgtaatgcaagctgttggctctgtcatgacaaacaaatacagtgaaggatatcccggt 358
Query: 304 gctagatactatggaggaaatgagtacattgacatggccgagaccttgtgtcagaagcgt 363
|| ||||||||||| |||||||||| ||||||||||| || || | || |||||||||
Sbjct: 359 gcaagatactatggtggaaatgagtttattgacatggcagaaacactatgccagaagcgt 418
Query: 364 gcacttgaagcttttgggttggatccagcaaaatggggagtcaatgtgcagtcgttgtct 423
|| | ||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 419 gccttggaagcatttaggttggatccagcaaaatggggagtgaatgtgcagcctttgtct 478
Query: 424 ggttccccttctaacttccaagtttacactgctttattgaaacctcatgaaagaattatg 483
||||| ||||| || || || ||||| ||||| || | ||||||||||| ||||| |||
Sbjct: 479 ggttctccttccaattttcatgtttatactgcattgctaaaacctcatgatagaatcatg 538
Query: 484 gcactcgatcttccccatggtgggcatctatcacatggctatcagactgacaccaagaag 543
||||| |||||||| ||||| |||||||| || || || || |||||||||||||| |||
Sbjct: 539 gcacttgatcttcctcatggagggcatctttctcacggttaccagactgacaccaaaaag 598
Query: 544 atatcagctgtatcgatattctttgaaacaatgccgtacagattgaatgagactactggt 603
||||| || || || ||||| ||||| |||||||| || |||||| |||| | || ||
Sbjct: 599 atatccgcggtctctatattttttgagacaatgccatatagattggatgaaagcacagga 658
Query: 604 tatattgattatgaccagatggagaaaagtgctgcactttttaggccaaagttaattgtc 663
|| ||||| ||||||||| ||||| | ||| ||| || || ||||| ||||||||
Sbjct: 659 tacattgactatgaccagttggaggcatcggctaaactcttcag-ccaaaattaattgtt 717
Query: 664 gctggtgctagtgcttatgctcgcctttatgattatgaacgtattcgtaaggtctgtgat 723
|| || |||||||||||||| || || ||||||||||| || || || ||||| ||||||
Sbjct: 718 gcgggagctagtgcttatgcccgtctatatgattatgaccgcatacgcaaggtgtgtgat 777
Query: 724 aaacagaaggcagtaatgttggctgatatggcacacatcagtgggttggttgctgcaggt 783
||||| || || || ||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct: 778 aaacaaaaagctgtgttgttggcagatatggcacacattagtggattggttgctgctggt 837
Query: 784 gttattccttctccttttgattatgcagatgttgtaacaaccacaacacataagtcactt 843
||||| ||||| ||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct: 838 gttatcccttcaccttttgattatgcagatgttgtgactaccacaacccacaagtcactt 897
Query: 844 cgtggaccacgtggggctatgatcttcttcaggaagggtgtgaaggaaataaacaagaaa 903
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 898 cgtggaccccgtggggctatgatcttcttcaggaagggggtgaaagaaatcaacaaacaa 957
Query: 904 gggcaggaagtgttgtatgactacgaagacaaaataaatcaggctgtttttcctggactt 963
|| |||| ||| |||||||||| || |||||||| || || || ||||| || |||||
Sbjct: 958 ggaaaggaggtgctgtatgactatgaggacaaaatcaaccaagccgttttcccaggactg 1017
Query: 964 caaggtggtcctcacaatcacactattacaggcttggcagttgcactgaagcaggctatg 1023
||||| ||||||||||| || || ||||| || || || |||||| ||||||||||||
Sbjct: 1018 caagggggtcctcacaaccatacaattactggtttagctgttgcattgaagcaggctaca 1077
Query: 1024 acgccagaat-tcaagaattaccaaaaacaagtgcttagtaactcctcggcttttgcaca 1082
|| ||||| | | ||| | || ||| | || || || ||||| | ||| ||||||||
Sbjct: 1078 actccagagtataaagca-tatcaagagcaggttctcagtaattgctcaaaatttgcaca 1136
Query: 1083 gagtttgatagagaaaggctatgaacttgtatctggtggaactgaaaaccatttagtgtt 1142
| | ||| |||| |||||||| ||||| || ||||||||||| || ||| |||| ||
Sbjct: 1137 ggctctgagtgagaggggctatgagcttgtttccggtggaactgagaatcatctagtttt 1196
Query: 1143 ggtgaa-cttaagaaacaagggcatcgatggctcaagggttgaaaaggtgttagaatcag 1201
|||||| || ||| |||||||| || |||||||| || ||||| |||||||| |||||||
Sbjct: 1197 ggtgaatctgaag-aacaagggtattgatggctccagagttgagaaggtgttggaatcag 1255
Query: 1202 ttcatatagctgccaataaaaatactgttccgggggatgtgtctgctatgattcccggag 1261
|||| || || || |||||||| || |||||||| ||||||||||||||| |||| || |
Sbjct: 1256 ttcacattgcagcaaataaaaacaccgttccgggagatgtgtctgctatggttcctggtg 1315
Query: 1262 gcatccgaatggg 1274
||||||| |||||
Sbjct: 1316 gcatccggatggg 1328
>gnl|LJGI|TC77069 similar to UniRef100_P34899 Cluster: Serine
hydroxymethyltransferase, mitochondrial precursor; n=1;
Pisum sativum|Rep: Serine hydroxymethyltransferase,
mitochondrial precursor - Pisum sativum (Garden pea),
partial (39%)
Length = 979
Score = 184 bits (93), Expect = 1e-45
Identities = 225/269 (83%)
Strand = Plus / Plus
Query: 187 aaagctcgtcaatggaagggattggaacttataccttcggagaatttcacgtcgctgtcg 246
|||||| | ||||||||||| |||| || ||||| || ||||||||||| || || ||
Sbjct: 251 aaagctagacaatggaaggggctggagctgataccctcagagaatttcacttctctctct 310
Query: 247 gtgatgcaagctgttggatcggtgatgacgaataaatacagtgaagggtatcctggtgct 306
|| |||||||||||||| || || ||||| || |||||||||||||| ||||| |||||
Sbjct: 311 gtaatgcaagctgttggctctgtcatgacaaacaaatacagtgaaggatatcccggtgca 370
Query: 307 agatactatggaggaaatgagtacattgacatggccgagaccttgtgtcagaagcgtgca 366
||||||||||| |||||||||| ||||||||||| || || | || |||||||||||
Sbjct: 371 agatactatggtggaaatgagtttattgacatggcagaaacactatgccagaagcgtgcc 430
Query: 367 cttgaagcttttgggttggatccagcaaaatggggagtcaatgtgcagtcgttgtctggt 426
| ||||| ||| ||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct: 431 ttggaagcatttaggttggatccagcaaaatggggagtgaatgtgcagcctttgtctggt 490
Query: 427 tccccttctaacttccaagtttacactgc 455
|| ||||| || || || ||||| |||||
Sbjct: 491 tctccttccaattttcatgtttatactgc 519