Miyakogusa Predicted Gene
- Lj1g3v0131270.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0131270.1 tr|B9GS30|B9GS30_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_816094 PE=4
SV=1,31.88,1e-17,seg,NULL; bHLH-MYC_N,Transcription factor MYC/MYB
N-terminal; GB DEF: AT3G15240,NULL;
SERINE/THREONI,NODE_58146_length_1311_cov_22.672770.path1.1
(1014 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66971 homologue to UniRef100_A7P1R4 Cluster: Chromoso... 1187 0.0
gnl|LJGI|TC76834 similar to UniRef100_A7P1R4 Cluster: Chromosome... 728 0.0
gnl|LJGI|TC82237 similar to UniRef100_A7P1R4 Cluster: Chromosome... 531 e-150
gnl|LJGI|TC80701 similar to UniRef100_A7P1R4 Cluster: Chromosome... 287 7e-77
gnl|LJGI|AV407673 homologue to UniRef100_A7P1R4 Cluster: Chromos... 182 3e-45
>gnl|LJGI|TC66971 homologue to UniRef100_A7P1R4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (51%)
Length = 860
Score = 1187 bits (599), Expect = 0.0
Identities = 602/603 (99%)
Strand = Plus / Plus
Query: 1 atggtgggctcaggaacaacatcagataggagcaaagaagctgtagggatgatggccctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 atggtgggctcaggaacaacatcagataggagcaaagaagctgtagggatgatggcccct 317
Query: 61 catgaggcccttagaagcgtatgtctcaactcagattggaattactctgtcttctggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 catgaggcccttagaagcgtatgtctcaactcagattggaattactctgtcttctggacc 377
Query: 121 attcgtcctcgcccaagggtcagaggtggcagtgggtgcaaggttggggatgataatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attcgtcctcgcccaagggtcagaggtggcagtgggtgcaaggttggggatgataatggc 437
Query: 181 agcttgatgttgatgtgggaagatgggttttgccgtggaagcgatttagactgcctggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agcttgatgttgatgtgggaagatgggttttgccgtggaagcgatttagactgcctggaa 497
Query: 241 gagattgatggagaggatccaatcagaaaatccttcagcaaaatgtccattcagttatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gagattgatggagaggatccaatcagaaaatccttcagcaaaatgtccattcagttatat 557
Query: 301 aattatggagaagggttgatgggaaaggttacatctgataagtgccacaagtgggtcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattatggagaagggttgatgggaaaggttacatctgataagtgccacaagtgggtcttc 617
Query: 361 aaagagcccacagaaagtgagcctgatatctccaactactggcagagctcctttgatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaagagcccacagaaagtgagcctgatatctccaactactggcagagctcctttgatgct 677
Query: 421 cttccacctgaatggatcgatcagtttgagtcaggcattcagacaattgctgtaattcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttccacctgaatggatcgatcagtttgagtcaggcattcagacaattgctgtaattcaa 737
Query: 481 gctgggcatggccttctacaacttggctcttgcaagattattcctgaagatctccatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gctgggcatggccttctacaacttggctcttgcaagattattcctgaagatctccatttc 797
Query: 541 gtgctaagaatgaggcacacttttgaatctctacgatatcaatctggcttctacctctcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtgctaagaatgaggcacacttttgaatctctacgatatcaatctggcttctacctctcc 857
Query: 601 caa 603
|||
Sbjct: 858 caa 860
>gnl|LJGI|TC76834 similar to UniRef100_A7P1R4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 630
Score = 728 bits (367), Expect = 0.0
Identities = 376/379 (99%)
Strand = Plus / Plus
Query: 636 tacttcagttccttcaagaccatccaacattccaattagcccaactccttcactcctcaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttcagttccttcaagaccatccaacattccaattagcccaactccttcactcctcaa 60
Query: 696 ctggagtcagaggcctcttggttctgctacttctatgctatcctcaccaggttttcaaca 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctggagtcagaggcctcttggttctgctacttctatgctatcctcaccaggttttcaaca 120
Query: 756 tatggggtgcccacaggccaaagatgagactcatatgtttctcatgcctcatgcatctga 815
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 tatggggtgcccccaggccaaagatgagactcatatgtttttcatgcctcatgcatctga 180
Query: 816 agctgcaaaaagagaagacatgatgggggagcatgaaaacaacatgaagtggctaaatgg 875
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agctgccaaaagagaagacatgatgggggagcatgaaaacaacatgaagtggctaaatgg 240
Query: 876 gtattcctccttcactgcacctgatcgagtggcttcttcatcctcttctatttcagtgga 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtattcctccttcactgcacctgatcgagtggcttcttcatcctcttctatttcagtgga 300
Query: 936 tcaccatcaagctgtggagtataggaattcaggaggaggtatatacacgaatgtcatgga 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccatcaagctgtggagtataggaattcaggaggaggtatatacacgaatgtcatgga 360
Query: 996 aacctttctagagtgaatg 1014
|||||||||||||||||||
Sbjct: 361 aacctttctagagtgaatg 379
>gnl|LJGI|TC82237 similar to UniRef100_A7P1R4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1358
Score = 531 bits (268), Expect = e-150
Identities = 481/552 (87%), Gaps = 10/552 (1%)
Strand = Plus / Plus
Query: 186 gatgttgatgtgggaagatgggttttgccgtggaagcgatttagactgcctggaagagat 245
|||||||||||||||||||||||||||||| ||||| | | ||||| || ||
Sbjct: 3 gatgttgatgtgggaagatgggttttgccgaggaaggggt---------ctggatgatat 53
Query: 246 tgatggagaggatccaatcagaaaatccttcagcaaaatgtccattcagttatataatta 305
||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 54 tgatggagaggatcctgtcagaaaagttttcagcaaaatgtccattcagttgtataatta 113
Query: 306 tggagaagggttgatgggaaaggttacatctgataagtgccacaagtgggtcttcaaaga 365
|||||||||||||||||| || ||| ||||||||||||| |||||||||||||| |||||
Sbjct: 114 tggagaagggttgatggggaaagttgcatctgataagtgtcacaagtgggtctttaaaga 173
Query: 366 gcccacagaaagtgagcctgatatctccaactactggcagagctcctttgatgctcttcc 425
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gcccacagaatgtgagcctaatatctccaactactggcagagctcctttgatgctcttcc 233
Query: 426 acctgaatggatcgatcagtttgagtcaggcattcagacaattgctgtaattcaagctgg 485
|||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 234 tcctgaatggacagaccagtttgagtcaggcattcagaccatagctgtaattcaagccgg 293
Query: 486 gcatggccttctacaacttggctcttgcaagattattcctgaagatctccatttcgtgct 545
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 294 acatggccttctccaacttggttcttgcaagattattcctgaagacctccatttcgtcct 353
Query: 546 aagaatgaggcacacttttgaatctctacgatatcaatctggcttctacctctcccaact 605
||||||||| |||||||||||||||||| | || |||||||| ||||||||||| |||||
Sbjct: 354 aagaatgagacacacttttgaatctctaggttaccaatctggtttctacctctctcaact 413
Query: 606 tttctcttcaactaggaacacttcctctcctacttcagttccttcaagaccatccaacat 665
||||||||||| |||||| |||| ||| | |||||| | ||||| | || ||||| |||
Sbjct: 414 cttctcttcaacaaggaactcttcttcttcaacttcaataccttcgaaactatccaccat 473
Query: 666 tccaattagcccaactccttcactcctcaactggagtcagaggcctcttggttctgctac 725
||| ||| | || ||||| ||||| |||||||| |||||||||| || | |||||||
Sbjct: 474 tccgattcggcc-cctcctccactcttcaactggggtcagaggccactcaatcctgctac 532
Query: 726 ttctatgctatc 737
|||| |||||||
Sbjct: 533 ttctctgctatc 544
Score = 71.9 bits (36), Expect = 7e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 943 caagctgtggagtataggaattcaggaggaggtatatacacgaatgtcatggaaaccttt 1002
|||| |||||||||||||||||||| |||||| || ||| || |||||||||| ||||||
Sbjct: 1005 caaggtgtggagtataggaattcagaaggaggaatgtacccggatgtcatggagaccttt 1064
Query: 1003 ctagagtgaatg 1014
| |||||||||
Sbjct: 1065 ttggagtgaatg 1076
>gnl|LJGI|TC80701 similar to UniRef100_A7P1R4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (28%)
Length = 488
Score = 287 bits (145), Expect = 7e-77
Identities = 274/317 (86%)
Strand = Plus / Plus
Query: 421 cttccacctgaatggatcgatcagtttgagtcaggcattcagacaattgctgtaattcaa 480
||||| |||||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct: 34 cttcctcctgaatggacagaccagtttgagtcaggcattcagaccatagctgtaattcaa 93
Query: 481 gctgggcatggccttctacaacttggctcttgcaagattattcctgaagatctccatttc 540
|| || ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 94 gccggacatggccttctccaacttggttcttgcaagattattcctgaagacctccatttc 153
Query: 541 gtgctaagaatgaggcacacttttgaatctctacgatatcaatctggcttctacctctcc 600
|| ||||||||||| |||||||||||||||||| | || |||||||| |||||||||||
Sbjct: 154 gtcctaagaatgagacacacttttgaatctctaggttaccaatctgggttctacctctct 213
Query: 601 caacttttctcttcaactaggaacacttcctctcctacttcagttccttcaagaccatcc 660
||||| ||||||||||| |||||| |||| ||| | |||||| | ||||| | || ||||
Sbjct: 214 caactcttctcttcaacaaggaactcttcttcttcaacttcaataccttcgaaactatcc 273
Query: 661 aacattccaattagcccaactccttcactcctcaactggagtcagaggcctcttggttct 720
| |||||| ||| | ||| ||||| ||||| |||||||| |||||||||| || | ||
Sbjct: 274 accattccgattcggccacctcctccactcttcaactggggtcagaggccactcaatcct 333
Query: 721 gctacttctatgctatc 737
||||||||| |||||||
Sbjct: 334 gctacttctctgctatc 350
Score = 60.0 bits (30), Expect = 3e-08
Identities = 77/92 (83%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 766 ccacaggccaaagatgagactcatatgtttctcatgcctcatg---catctgaagctgca 822
|||||||||||||||||||| || ||| |||||||||||| | |||||||| ||||
Sbjct: 391 ccacaggccaaagatgagacacacttgtatctcatgcctcacgcatcatctgaaactgcg 450
Query: 823 aaaagagaagacatgatgggggagcatgaaaa 854
|| |||||||||||||||||||| |||||
Sbjct: 451 cgaattgaagacatgatgggggagcacgaaaa 482
>gnl|LJGI|AV407673 homologue to UniRef100_A7P1R4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 427
Score = 182 bits (92), Expect = 3e-45
Identities = 134/148 (90%)
Strand = Plus / Plus
Query: 20 catcagataggagcaaagaagctgtagggatgatggcccttcatgaggcccttagaagcg 79
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 280 catcagataggagcaaagaagctgttgggatgatggcccttcatgaggccctcagaaccg 339
Query: 80 tatgtctcaactcagattggaattactctgtcttctggaccattcgtcctcgcccaaggg 139
| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 340 tctgtcttaactcagactggacttattctgtcttctggaccattcgtcctcgcccaagag 399
Query: 140 tcagaggtggcagtgggtgcaaggttgg 167
| ||||| || | ||| |||||||||||
Sbjct: 400 ttagaggcggtaatggctgcaaggttgg 427