Miyakogusa Predicted Gene

Lj1g3v0118830.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0118830.2 Non Chatacterized Hit- tr|G3P8B8|G3P8B8_GASAC
Uncharacterized protein OS=Gasterosteus aculeatus GN=R,29.66,6e-18,RNA
recognition motif,RNA recognition motif domain; Zinc finger
domain,Zinc finger, RanBP2-type; RRM,CUFF.25259.2
         (1848 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65570 similar to UniRef100_A7PCC5 Cluster: Chromosome...   971   0.0  

>gnl|LJGI|TC65570 similar to UniRef100_A7PCC5 Cluster: Chromosome chr2 scaffold_11,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_11, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (5%)
          Length = 727

 Score =  971 bits (490), Expect = 0.0
 Identities = 493/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaacctggtcgctatgctctgcatcaaggatgggataataacagcgctcttgagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atggaacctggtcgctatgctctgcatcaaggatgggataataacagcgctcttgagggt 293

                                                                       
Query: 61  tatggtgcggtccatgagccaaattttcgggttggtgattcttatgatgaaagacgattt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tatagtgcggtccatgagccaaattttcgggttggtgattcttatgatgaaagacgattt 353

                                                                       
Query: 121 atagatgaaagatatcaaagagatgctatatatcagagaaatactttcccccgtgatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atagatgaaagatatcaaagagatgctatatatcagagaaatactttcccccgtgatggt 413

                                                                       
Query: 181 ttggacagagaggcctatctgccaccaggacctgctgttggccactggagtcaatccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttggacagagaggcctatctgccaccaggacctgctgttggccactggagtcaatccaaa 473

                                                                       
Query: 241 cggagaggttatgacgaagattatccacttgaaaggcaatctagacgacttcagaggcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cggagaggttatgacgaagattatccacttgaaaggcaatctagacgacttcagaggcct 533

                                                                       
Query: 301 tatcatgaatcttataatcagatcgacagggatcgtgaaatcggcatgtaccaagaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tatcatgaatcttataatcagatcgacagggatcgtgaaatcggcatgtaccaagaatat 593

                                                                       
Query: 361 gataaatttcaggatgactataccagcattgaaaattatgctgatcgaggatatgataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gataaatttcaggatgactataccagcattgaaaattatgctgatcgaggatatgataaa 653

                                                                       
Query: 421 cctgccaggtttgcaggagatgaccgtgatgattatgcatatgatgattatggctacaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cctgccaggtttgcaggagatgaccgtgatgattatgcatatgatgattatggctacaag 713

                         
Query: 481 tcgcgtgtttctca 494
           ||||||||||||||
Sbjct: 714 tcgcgtgtttctca 727