Miyakogusa Predicted Gene
- Lj1g3v0114210.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0114210.1 tr|F2EIQ7|F2EIQ7_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,25.4,8e-17,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR_3,Pentatricopeptide repeat;
PPR,,CUFF.25232.1
(1657 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS317514 weakly similar to UniRef100_A7NWR8 Cluster: Ch... 1261 0.0
gnl|LJGI|TC75933 similar to UniRef100_A7NWR8 Cluster: Chromosome... 813 0.0
>gnl|LJGI|FS317514 weakly similar to UniRef100_A7NWR8 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (29%)
Length = 678
Score = 1261 bits (636), Expect = 0.0
Identities = 639/640 (99%)
Strand = Plus / Plus
Query: 1 atgctcaccaagttccgaatccttcacctcttcacccatcgcctctctccgagaatcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atgctcaccaagttccgaatccttcacctcttcacccatcgcctctctccgagaatcgcc 98
Query: 61 gccggcaatggctcacatcgcttcctctacggcaaccctctctgcaccgccgtcaagccg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gccggcaatggctcgcatcgcttcctctacggcaaccctctctgcaccgccgtcaagccg 158
Query: 121 ccactgaccccggagtcaccggaactcccagcttgggtcaagttctccgacaacccaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ccactgaccccggagtcaccggaactcccagcttgggtcaagttctccgacaacccaacc 218
Query: 181 cctccaaacgccgactcagacgacgacttcgttatcccttccctcgctcactgggtcgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cctccaaacgccgactcagacgacgacttcgttatcccttccctcgctcactgggtcgat 278
Query: 241 gcccacatccttgacgccaaacccaaactcgtgaccccaacattcaatgaaaacaagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcccacatccttgacgccaaacccaaactcgtgaccccaacattcaatgaaaacaagcac 338
Query: 301 gactatgtcgaagcaatcagtacactcctcaaggaacaccactcttcccctgagcttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gactatgtcgaagcaatcagtacactcctcaaggaacaccactcttcccctgagcttgtt 398
Query: 361 gctcaagcacttgatggacacggttttcaggtatcaaacagttccgttcagcagattctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gctcaagcacttgatggacacggttttcaggtatcaaacagttccgttcagcagattctg 458
Query: 421 aagagattcaacaatgattgggtcccagctttcggattcttcacttgggcaaaaacgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagagattcaacaatgattgggtcccagctttcggattcttcacttgggcaaaaacgcaa 518
Query: 481 acaggttatgagcattctcctgaactgtacaatttgatgattgacatactggggaagtcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acaggttatgagcattctcctgaactgtacaatttgatgattgacatactggggaagtcc 578
Query: 541 aagaattttgatcttgtgtgggagttggtggaggaaatggcaaaacatgaagggtacgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagaattttgatcttgtgtgggagttggtggaggaaatggcaaaacatgaagggtacgtg 638
Query: 601 acattgtatacaatgactaaggttttgaggaggcttacta 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acattgtatacaatgactaaggttttgaggaggcttacta 678
>gnl|LJGI|TC75933 similar to UniRef100_A7NWR8 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (12%)
Length = 539
Score = 813 bits (410), Expect = 0.0
Identities = 456/466 (97%), Gaps = 4/466 (0%)
Strand = Plus / Plus
Query: 1196 ttgaggatatgcccaagcaagggattgtgcgagatgtggtgacttacaatacaatgattt 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttgaggatatgcccaagcaagggattgtgcgagatgtggtgacttacaataccatgattt 60
Query: 1256 ctactgcttgtgcgcactcgcgggaagaaactgctcttaggttgctgaaggaaatggaag 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctactgcttgtgcgcactcgcgggaagaaactgctcttaggttgctgaaggaaatggaag 120
Query: 1316 agagatcatgcaagccggatcttgagacgtatcatccattgctcaagatgtgctgtaaaa 1375
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 agagatcatgcacgccggatcttgagacgtatcatcccttgctcaagatgtgctgtaaaa 180
Query: 1376 agaagagaatgaaggtgctcaagttt-ttgttggagcacatgttcaagaatgatttgagc 1434
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 agaagagaatgaaggtgctcaagtttcttgttggagcacatgttcaagaatgatttgagc 240
Query: 1435 cctgatttgggaactttctcacttttggtacatgg-cctgcgtaaaagtggaaaacttga 1493
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 cctgatttgggaactttctcacttttggtacatggccctgcgtaaaagtggaaaacttga 300
Query: 1494 tcatgcttgctcattc-tttgaggaattgatctcgcggggattaactccgaggcatggcg 1552
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 tcatgcttgctcattcttttgaggaattgatctcgcggggattaactccgaggcctggcg 360
Query: 1553 cgctcaagcaattggtaaaagatctggaggccaagagcatgttaaaagagaaggaacaca 1612
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgctcaagccattggtaaaagatctggaggccaagagcatgttaaaagagaaggaacaca 420
Query: 1613 ttgagaagttgatgacacca-ccaagtataagatttacttcatagt 1657
|||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 421 ttgagaagttgatgacaccacccacgtataagatttacttcatagt 466