Miyakogusa Predicted Gene

Lj1g3v0112600.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0112600.1 Non Chatacterized Hit- tr|D7MBC7|D7MBC7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,29.11,3e-17,seg,NULL,CUFF.25213.1
         (1317 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79381 weakly similar to UniRef100_A7NWS3 Cluster: Chr...   105   7e-22

>gnl|LJGI|TC79381 weakly similar to UniRef100_A7NWS3 Cluster: Chromosome chr5
           scaffold_2, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 634

 Score =  105 bits (53), Expect = 7e-22
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                       
Query: 118 cagacattcagctcgcttagctttccatcccctccatcagttttcacatccccccatgcc 177
           ||||||||||  || ||||| ||  |||| |||||||| ||||||||||| ||||||| |
Sbjct: 199 cagacattcaattcacttagtttctcatctcctccatctgttttcacatcaccccatgtc 258

                                                                       
Query: 178 agctgtcacaaggaatccagattcctcaggaggcataaccttttggacacatcaacacct 237
           ||||||| ||||||||| |||||| | || ||||||||||  || | |||||||| ||||
Sbjct: 259 agctgtctcaaggaatctagattcgttagcaggcataaccaattcggcacatcaaaacct 318

                                                            
Query: 238 aaagttttgtctgaagatgtcaataaaatatattcatgtgaagaggctc 286
           || ||||  ||||||||||| |||||| |  | ||| ||||||||||||
Sbjct: 319 aaggtttcatctgaagatgtaaataaagttcactcaagtgaagaggctc 367