Miyakogusa Predicted Gene
- Lj1g3v0101540.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0101540.1 tr|Q1WK56|Q1WK56_LOTJA CYC3 OS=Lotus japonicus
PE=2 SV=1,99.46,0,TCP,Transcription factor TCP subgroup; R,CYC/TB1, R
domain; seg,NULL; TCP,Transcription factor, TCP,gene.g28833.t1.1
(1111 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|NP7225961 GB|DQ202477.1|ABB36473.1 CYC3;TCP box gene; L... 2008 0.0
gnl|LJGI|NP7225963 GB|DQ202475.1|ABB36471.1 CYC1;TCP box gene; L... 127 2e-28
gnl|LJGI|TC78109 homologue to UniRef100_Q1WK57 Cluster: CYC2; n=... 98 1e-19
>gnl|LJGI|NP7225961 GB|DQ202477.1|ABB36473.1 CYC3;TCP box gene; LjCYC3
Length = 1113
Score = 2008 bits (1013), Expect = 0.0
Identities = 1022/1025 (99%)
Strand = Plus / Plus
Query: 87 cattgatcctgaaaatatcaataattttcctcaggatccacttgtttctcatcccttcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cattgatcctgaaaatatcaataattttcctcaggatccacttgtttctcatcccttcat 146
Query: 147 acatgatagtaacatcaatgatgctccaatattcacacatgacacaaccaatttggcagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 acatgatagtaacatcaatgatgctccaatattcacacatgacacaaccaatttggcagt 206
Query: 207 ttcagtttcacacttgcttgaacaacaggatccacttggtggtaataactatgctagtag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttcagtttcacacttgcttgaacaacaggatccacttggtggtaataactatgctagtag 266
Query: 267 cattgttcctaatttcctcagagcttcaaaacctgcagcttctgcttctgcagctgcagc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cattgttcctaatttcctcagagcttcaaaacctgcagcttctgcttctgcagctgcagc 326
Query: 327 catggctaccacaaagaaagacaggcacagcaagattcacacatctcaggggttaaggga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catggctaccacaaagaaagacaggcacagcaagattcacacatctcaggggttaaggga 386
Query: 387 ccgccgggtgaggctatcgagcgagatagcgcgaaagttcttcgatcttcaggacatgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccgccgggtgaggctatcgagcgagatagcgcgaaagttcttcgatcttcaggacatgct 446
Query: 447 ggagtttgacaagccaagcaacacacttgagtggctcttcacaaagtctgagagtgcaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggagtttgacaagccaagcaacacacttgagtggctcttcacaaagtctgagagtgcaat 506
Query: 507 ccaagagcttgcaaggagtaagaactgttcctgcagcagtaacagtaacaacaacccttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaagagcttgcaaggagtaagaactgttcctgcagcagtaacagtaacaacaacccttc 566
Query: 567 aaataacaacaaatcattatttggtggtggtgataatcataatggaactaattccatcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaataacaacaaatcattatttggtggtggtgataatcataatggaactaattccatcag 626
Query: 627 agggaggggcaacagcaagttgaagtggactacacagagggatcaagatgtttgtgttct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agggaggggcaacagcaagttgaagtggactacacagagggatcaagatgtttgtgttct 686
Query: 687 tcagaataagaaggagtcaagggagagagcaagagcaagagctagagaaagaacctttta 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 687 tcagaataagaaggagtcaagggagagagcaagagcaagagctagagaaagaacctgtta 746
Query: 747 caagatgttggaagatcaaagattgcctgcaaatactactcaaataatgcatcaattgag 806
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 747 caagatgttggaagatcaaagatgccctgcaaatactactcaaataatgcatcaattgag 806
Query: 807 gtcatcatcacctattcagcttcttcaaccctatcctcacctaatggataatagtgaagc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtcatcatcacctattcagcttcttcaaccctatcctcacctaatggataatagtgaagc 866
Query: 867 agtatctggtggtggtggtggagatgggtttaatgtgattgaggaatctatcatgataaa 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agtatctggtggtggtggtggagatgggtttaatgtgattgaggaatctatcatgataaa 926
Query: 927 aaggaacatgatgtcttctaattctcatccccacgaaaaccatcaccttgcaatccctaa 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 aaggaacatgatgtcttctaattctcatccccacgaaaaccatcaccttgcaatccctaa 986
Query: 987 taaggaagcaggtttcaacaacaactatattgactaccctctattgcagccctattccac 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 taaggaagcaggtttcaacaacaactatattgactaccctctattgcagccctattccac 1046
Query: 1047 taccccaaattgggaaatagccaccatgaacatgaatctctctacatgtttcatgaacca 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 taccccaaattgggaaatagccaccatgaacatgaatctctctacatgtttcatgaacca 1106
Query: 1107 gtggt 1111
|||||
Sbjct: 1107 gtggt 1111
Score = 69.9 bits (35), Expect = 3e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 atgttctcttccacctcatatcatgactccattaa 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 atgttctcttccacctcatatcatgactccattaa 35
>gnl|LJGI|NP7225963 GB|DQ202475.1|ABB36471.1 CYC1;TCP box gene; LjCYC1
Length = 1150
Score = 127 bits (64), Expect = 2e-28
Identities = 127/148 (85%)
Strand = Plus / Plus
Query: 340 aagaaagacaggcacagcaagattcacacatctcaggggttaagggaccgccgggtgagg 399
||||| ||||||||||||||||||||||| |||||||| || |||||| | ||||||||
Sbjct: 337 aagaaggacaggcacagcaagattcacacctctcagggcttgagggacaggagggtgagg 396
Query: 400 ctatcgagcgagatagcgcgaaagttcttcgatcttcaggacatgctggagtttgacaag 459
|| || | |||||| ||||||||||||||||||||||| |||||| | | |||||||||
Sbjct: 397 ctttcaatcgagatcgcgcgaaagttcttcgatcttcaagacatgttagggtttgacaaa 456
Query: 460 ccaagcaacacacttgagtggctcttca 487
| ||||| || || |||||||||||||
Sbjct: 457 gccagcaataccctcgagtggctcttca 484
>gnl|LJGI|TC78109 homologue to UniRef100_Q1WK57 Cluster: CYC2; n=1; Lotus
japonicus|Rep: CYC2 - Lotus japonicus, complete
Length = 1544
Score = 97.6 bits (49), Expect = 1e-19
Identities = 125/149 (83%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 340 aagaaagacaggcacagcaagattcacacatctcaggggttaagggaccgccgggtgagg 399
||||||||| |||||||||||||| |||| ||||||||| | |||||||| ||||||||
Sbjct: 316 aagaaagaccggcacagcaagatttacacctctcaggggctgagggaccggagggtgagg 375
Query: 400 ctatcgagcgagatagcgcgaaagttcttcgatcttcaggacatgctggagt-ttgacaa 458
|| || | |||||| || |||||||||| |||||||| |||||||| | || |||| ||
Sbjct: 376 ctctcaatcgagatcgcaagaaagttctttgatcttcaagacatgctagggtattgataa 435
Query: 459 gccaagcaacacacttgagtggctcttca 487
| |||||||| || |||||||||||||
Sbjct: 436 agccagcaacaccctcgagtggctcttca 464