Miyakogusa Predicted Gene
- Lj1g3v0100500.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0100500.1 tr|Q76F91|Q76F91_9ACAR Cytochrome c oxidase
subunit 1 OS=Ornithodoros porcinus GN=COI PE=3 SV=1,26.21,4.6,
,CUFF.25210.1
(304 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC594505 404 e-112
gnl|LJGI|BW596036 365 e-100
gnl|LJGI|DC594173 351 2e-96
gnl|LJGI|DC594090 homologue to UniRef100_A4M2J8 Cluster: Squalen... 74 5e-13
gnl|LJGI|TC61586 74 5e-13
gnl|LJGI|FS322393 homologue to UniRef100_A4M2J8 Cluster: Squalen... 58 3e-08
gnl|LJGI|AV777990 similar to UniRef100_Q4RFJ5 Cluster: Chromosom... 58 3e-08
gnl|LJGI|GO016292 similar to UniRef100_Q6BXW0 Cluster: Debaryomy... 50 8e-06
gnl|LJGI|CB826921 similar to UniRef100_UPI00006A06AA Cluster: Le... 50 8e-06
gnl|LJGI|AV771712 50 8e-06
gnl|LJGI|TC66565 similar to UniRef100_Q6BXW0 Cluster: Debaryomyc... 50 8e-06
>gnl|LJGI|DC594505
Length = 357
Score = 404 bits (204), Expect = e-112
Identities = 248/263 (94%), Gaps = 11/263 (4%)
Strand = Plus / Plus
Query: 51 cttgcgttcgtcggttgccgtcatcttcctcttggttgcgttccccatttgctctcgtca 110
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1 cttgcgttcgtcggttgccgtcatcttcctcttggttgcgttccccatctgctcccgtca 60
Query: 111 aatcgcctctgctacctccgattgcatcatcgccgacgctcaccttcccttccgtgttca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcgcctctgctacctccgattgcatcatcgccgacgctcaccttcccttccgtgttca 120
Query: 171 aggaggtttagctc---------ggtggaaccagccatatttcgacagctcccttcattc 221
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggaggtttagctcgctggaactggtggaaccagccatatttcgacagctcccttcattc 180
Query: 222 actgttgtttgtccatcattttttctcaagtccagatttgagtgcattcccaaggagaaa 281
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgttgtttgtccat--ttttttctcaagtccagatttgagtgcattcccaaggagaaa 238
Query: 282 atcacgaatgagcaatgcttgag 304
||| || ||||||||||||||||
Sbjct: 239 atcgcggatgagcaatgcttgag 261
>gnl|LJGI|BW596036
Length = 485
Score = 365 bits (184), Expect = e-100
Identities = 228/243 (93%), Gaps = 11/243 (4%)
Strand = Plus / Plus
Query: 71 tcatcttcctcttggttgcgttccccatttgctctcgtcaaatcgcctctgctacctccg 130
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 7 tcatcttcctcttggttgcgttccccatctgctcccgtcaaatcgcctctgctacctccg 66
Query: 131 attgcatcatcgccgacgctcaccttcccttccgtgttcaaggaggtttagctc------ 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 attgcatcatcgccgacgctcaccttcccttccgtgttcaaggaggtttagctcgctgga 126
Query: 185 ---ggtggaaccagccatatttcgacagctcccttcattcactgttgtttgtccatcatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 127 actggtggaaccagccatatttcgacagctcccttcattcactgttgtttgtccat--tt 184
Query: 242 ttttctcaagtccagatttgagtgcattcccaaggagaaaatcacgaatgagcaatgctt 301
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 185 ttttctcaagtccagatttgagtgcattcccaaggagaaaatcgcggatgagcaatgctt 244
Query: 302 gag 304
|||
Sbjct: 245 gag 247
>gnl|LJGI|DC594173
Length = 570
Score = 351 bits (177), Expect = 2e-96
Identities = 221/236 (93%), Gaps = 11/236 (4%)
Strand = Plus / Plus
Query: 78 cctcttggttgcgttccccatttgctctcgtcaaatcgcctctgctacctccgattgcat 137
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 cctcttggttgcgttccccatctgctcccgtcaaatcgcctctgctacctccgattgcat 60
Query: 138 catcgccgacgctcaccttcccttccgtgttcaaggaggtttagctc---------ggtg 188
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 catcgccgacgctcaccttcccttccgtgttcaaggaggtttagctcgctggaactggtg 120
Query: 189 gaaccagccatatttcgacagctcccttcattcactgttgtttgtccatcattttttctc 248
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 gaaccagccatatttcgacagctcccttcattcactgttgtttgtccat--ttttttctc 178
Query: 249 aagtccagatttgagtgcattcccaaggagaaaatcacgaatgagcaatgcttgag 304
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 179 aagtccagatttgagtgcattcccaaggagaaaatcgcggatgagcaatgcttgag 234
>gnl|LJGI|DC594090 homologue to UniRef100_A4M2J8 Cluster: Squalene-hopene cyclase;
n=1; Geobacter bemidjiensis Bem|Rep: Squalene-hopene
cyclase -, partial (2%)
Length = 503
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 188 ggaaccagccatatttcgacagctcccttcattcactgttgtttg 232
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 139 ggaaccagccatatttcgacagctcccttcatctactgttgtttg 183
>gnl|LJGI|TC61586
Length = 794
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 188 ggaaccagccatatttcgacagctcccttcattcactgttgtttg 232
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 233 ggaaccagccatatttcgacagctcccttcatctactgttgtttg 277
>gnl|LJGI|FS322393 homologue to UniRef100_A4M2J8 Cluster: Squalene-hopene cyclase;
n=1; Geobacter bemidjiensis Bem|Rep: Squalene-hopene
cyclase -, partial (2%)
Length = 741
Score = 58.0 bits (29), Expect = 3e-08
Identities = 85/101 (84%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 188 ggaaccagccatatttcgaca-gctcccttcattcactgttgtttgtccatcattttttc 246
||||||| ||| ||||||||| ||||||||||| ||||||||||| |||| | ||||
Sbjct: 197 ggaaccaaccagatttcgacaagctcccttcat-cactgttgtttaatcatcctcctttc 255
Query: 247 tcaagtccagatttgagtgcattcccaaggagaaaatcacg 287
| || ||||| | ||| ||||||||||||||| ||||||||
Sbjct: 256 ttaattccaggtctgaatgcattcccaaggagcaaatcacg 296
>gnl|LJGI|AV777990 similar to UniRef100_Q4RFJ5 Cluster: Chromosome 8 SCAF15119 whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep:, partial (1%)
Length = 247
Score = 58.0 bits (29), Expect = 3e-08
Identities = 85/101 (84%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 188 ggaaccagccatatttcgaca-gctcccttcattcactgttgtttgtccatcattttttc 246
||||||| ||| ||||||||| ||||||||||| ||||||||||| |||| | ||||
Sbjct: 94 ggaaccaaccagatttcgacaagctcccttcat-cactgttgtttaatcatcctcctttc 152
Query: 247 tcaagtccagatttgagtgcattcccaaggagaaaatcacg 287
| || ||||| | ||| ||||||||||||||| ||||||||
Sbjct: 153 ttaattccaggtctgaatgcattcccaaggagcaaatcacg 193
>gnl|LJGI|GO016292 similar to UniRef100_Q6BXW0 Cluster: Debaryomyces hansenii
chromosome A of strain CBS767 of Debaryomyces hansenii;
n=1; Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii),
partial (11%)
Length = 810
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 155 ttcccttccgtgttcaaggaggttt 179
|||||||||||||||||||||||||
Sbjct: 628 ttcccttccgtgttcaaggaggttt 604
>gnl|LJGI|CB826921 similar to UniRef100_UPI00006A06AA Cluster: Leucine-rich repeats
and immunoglobulin-like domains protein 1 precursor
(LIG-1).; n=1;, partial (1%)
Length = 620
Score = 50.1 bits (25), Expect = 8e-06
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 188 ggaaccagccatatttcgacag-ctcccttcattcactgttgtttgtccatcattttttc 246
||||||| ||| ||||||||| |||||||||| ||||||||||| |||| | ||||
Sbjct: 154 ggaaccaaccagatttcgacaatctcccttcat-cactgttgtttaatcatcctcctttc 212
Query: 247 tcaagtccagatttgagtgcattcccaaggagaaaatcacg 287
| || ||||| | ||| ||||||||||||||| ||||||||
Sbjct: 213 ttaattccaggtctgaatgcattcccaaggagcaaatcacg 253
>gnl|LJGI|AV771712
Length = 448
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 185 ggtggaaccagccatatttcgacagctcccttcattcactgttgt 229
|||| ||||| ||||||||||||| |||| ||||| |||||||||
Sbjct: 299 ggtgtaaccaaccatatttcgacacctcctttcatccactgttgt 255
>gnl|LJGI|TC66565 similar to UniRef100_Q6BXW0 Cluster: Debaryomyces hansenii
chromosome A of strain CBS767 of Debaryomyces hansenii;
n=1; Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii),
partial (11%)
Length = 807
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 155 ttcccttccgtgttcaaggaggttt 179
|||||||||||||||||||||||||
Sbjct: 467 ttcccttccgtgttcaaggaggttt 491