Miyakogusa Predicted Gene
- Lj1g3v0052580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0052580.1 tr|Q54WL8|Q54WL8_DICDI ENTH domain-containing
protein OS=Dictyostelium discoideum GN=pcf11 PE=4
SV=2,34.44,4e-18,seg,NULL; no description,RNA polymerase II, large
subunit, CTD; CTD_bind,RNA polymerase II-binding d,CUFF.25202.1
(2415 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71174 similar to UniRef100_A7QUM0 Cluster: Chromosome... 1152 0.0
gnl|LJGI|AV408315 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 p... 654 0.0
gnl|LJGI|TC70581 similar to UniRef100_A7QUM0 Cluster: Chromosome... 567 e-160
gnl|LJGI|BW622639 549 e-155
gnl|LJGI|BP064656 homologue to UniRef100_Q9ZS85 Cluster: T4B21.1... 509 e-143
gnl|LJGI|TC76319 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 pr... 509 e-143
gnl|LJGI|AV769223 similar to UniRef100_A7QUM0 Cluster: Chromosom... 303 3e-81
gnl|LJGI|BP083927 similar to UniRef100_Q6IGC4 Cluster: HDC06630;... 200 3e-50
>gnl|LJGI|TC71174 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_179, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 779
Score = 1152 bits (581), Expect = 0.0
Identities = 581/581 (100%)
Strand = Plus / Plus
Query: 1 atgagcagcaatgacatgatggggcagaagcttccccctccgacactggtggatcgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgagcagcaatgacatgatggggcagaagcttccccctccgacactggtggatcgattc 251
Query: 61 aaggctctactccggcgacgcgatgatgaccctcgctttagggcttccgaagagattgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaggctctactccggcgacgcgatgatgaccctcgctttagggcttccgaagagattgtc 311
Query: 121 cagatttacgagctcttgttgtctgaactcacctgcaatctcaagcccatcatcaccgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagatttacgagctcttgttgtctgaactcacctgcaatctcaagcccatcatcaccgat 371
Query: 181 ctcaccatcatcgccgagcagcagagggaacacgctgagggcattgctgatgctatttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctcaccatcatcgccgagcagcagagggaacacgctgagggcattgctgatgctatttgc 431
Query: 241 accaggattctcgaggtgcatgcagatcaaaagcttccttcactttatcttttggacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 accaggattctcgaggtgcatgcagatcaaaagcttccttcactttatcttttggacagt 491
Query: 301 attgtgaagaatgttggccaggaatatgttaaatacttctctttacggctacctgaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attgtgaagaatgttggccaggaatatgttaaatacttctctttacggctacctgaagtt 551
Query: 361 ttctgtgaggcatacaggcaggttcaacctcacttgcattctgctatgcgtcatctcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctgtgaggcatacaggcaggttcaacctcacttgcattctgctatgcgtcatctcttt 611
Query: 421 ggtacctggtccaaagtcttctctgctcctgttctacgtaagattgaagctcaattgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtacctggtccaaagtcttctctgctcctgttctacgtaagattgaagctcaattgcaa 671
Query: 481 ttttcacgaggagttaataaccaaccatccaatgtcaatcccctcaggacttctgaatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttttcacgaggagttaataaccaaccatccaatgtcaatcccctcaggacttctgaatca 731
Query: 541 cctcgaccaactcatgggatacatgttaatccaaaatacgt 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cctcgaccaactcatgggatacatgttaatccaaaatacgt 772
>gnl|LJGI|AV408315 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 protein; n=1;
Arabidopsis thaliana|Rep: T4B21.1 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 342
Score = 654 bits (330), Expect = 0.0
Identities = 339/342 (99%)
Strand = Plus / Plus
Query: 789 tcatgcagttgattatggagtagttaaaacattaggtagagaagtagagttgagtgaatg 848
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tcatggagttgattatggactagttaaaaaattaggtagagaagtagagttgagtgaatg 60
Query: 849 gcagagaaagcagttttctggtgaaggtccgaagagatttcaaacttctaagacaacata 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagagaaagcagttttctggtgaaggtccgaagagatttcaaacttctaagacaacata 120
Query: 909 cagtcttattaatggacaacagcgtcaaagtccaagagctctaattgatgcatttggagg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagtcttattaatggacaacagcgtcaaagtccaagagctctaattgatgcatttggagg 180
Query: 969 tgacaaacggctgggtagaaatggtatagacaaggttttgacaacgtcatggcagaatac 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacaaacggctgggtagaaatggtatagacaaggttttgacaacgtcatggcagaatac 240
Query: 1029 tgaagaggaggagtttaattggggagatatgagtccaaaattagcagaacataatacaaa 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaagaggaggagtttaattggggagatatgagtccaaaattagcagaacataatacaaa 300
Query: 1089 taatggttatctgcagtcaactactggtttcaccacgggaaa 1130
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taatggttatctgcagtcaactactggtttcaccacgggaaa 342
>gnl|LJGI|TC70581 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_179, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 596
Score = 567 bits (286), Expect = e-160
Identities = 340/358 (94%)
Strand = Plus / Plus
Query: 2048 ggcttagtggtgcagaggcattaggaacagaatcagctccaggttttttgcgaactgata 2107
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 48 ggcttagtggtgcagaggcattaggaacagaatcagctccagtttttttgccaaatgata 107
Query: 2108 cggttgaggaaaagaaagatgatgaagagttggctgttcctgctgatgaggaccagaata 2167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cggttgaggaaaagaaagatgatgaagagttggctgttcctgctgatgaggaccagaata 167
Query: 2168 catgtgcattatgtctagaaccttttggtaagttttacagtgatgaaacggaggattgga 2227
|||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct: 168 catgtgcattatgtggagaaccttttgatgagttttacagtgatgaaacggaggagtgga 227
Query: 2228 tgtatagaggagctgtgtatcttaatgcacccaacggaacaacagcaggcttgaacaggt 2287
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 228 tgtatagaggagctgtgtatcttaatgcacccaacggaacaacagcaggtttggacaggt 287
Query: 2288 cacaattaggccccatcattcatgctaagtgcagatctgaatctagtgtggctccattta 2347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cacaattaggccccatcattcatgctaagtgcagatctgaatctagtgtggctccatcag 347
Query: 2348 atgattttgcgctggatgaagggggcaccagtgaggaagggagtaaaagaaaacgaat 2405
||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct: 348 atgattttgtgctggatgaagggggcaccactgaggaaggtggtcaaagaaaacgaat 405
Score = 93.7 bits (47), Expect = 5e-18
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 2011 aagccttctcgtaagtggtttgtgagtgtgaggatgtggcttagtggtgca 2061
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 aagccttctcgtaagtggtttgtgagtgagaggatgtggcttagtggtgca 2
>gnl|LJGI|BW622639
Length = 474
Score = 549 bits (277), Expect = e-155
Identities = 400/441 (90%)
Strand = Plus / Plus
Query: 1394 ttgagaacaaagacttcaataacgggaacctacatcagttgcctaatcagctagctggcc 1453
||||| |||||||||| | ||| |||| |||| |||| ||||||||||||| | |||| |
Sbjct: 34 ttgaggacaaagactttagtaaagggagcctatatcaattgcctaatcagcaatctggtc 93
Query: 1454 tgctttcatctaaccctcaaaaccgaggacaagcaccacaactacagttttttccatctc 1513
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 94 tggtttcatctaacccacaaaaccgaggacaagcacctcaactacagttttttccctctc 153
Query: 1514 aggatccggcagcatcacaatttagtgggagctcttttccaggacatggtgctgctagaa 1573
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 154 aggatccggcagcatcacgatttagtgggagctcttttcaaggacatggtggtgctagaa 213
Query: 1574 atacacatttgtcaaacgcgccaccaaatatggcattccctttacccggccaaaatatgg 1633
|||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 214 atacacatttgtcaaatgcgccaccaaacatgccattccctttaccaggccaaaatatgg 273
Query: 1634 tgaataactcttttcatttgctgggggcagccttgccacccttacatccagcccgacccc 1693
||||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| || |
Sbjct: 274 tgaataactctttacattttctggggggagccttgcgacccttacatccagcccggccgc 333
Query: 1694 cattgctacctcatccttatcctactcctcttgtttcaagtcagcagccaactgttccat 1753
||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||
Sbjct: 334 cattgctacctcatcctaatcatactcctcttgtttcaagtcaacggccaactgttccat 393
Query: 1754 attctaatttgattaattcactcgtggcccaaggtgtattctcatgggctaatccggtcc 1813
||||||||||| ||| ||||||||| |||||||||||| |||||| |||||| || |
Sbjct: 394 attctaatttgtttagttcactcgtcgcccaaggtgtaatctcatttcctaatcaggctc 453
Query: 1814 ctgcacaggattctgttggaa 1834
|||||||||||||||||||||
Sbjct: 454 ctgcacaggattctgttggaa 474
>gnl|LJGI|BP064656 homologue to UniRef100_Q9ZS85 Cluster: T4B21.1 protein; n=1;
Arabidopsis thaliana|Rep: T4B21.1 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 580
Score = 509 bits (257), Expect = e-143
Identities = 332/357 (92%)
Strand = Plus / Plus
Query: 973 aaacggctgggtagaaatggtatagacaaggttttgacaacgtcatggcagaatactgaa 1032
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 224 aaacggcttggtagaaatggtatagacaaggtttcgacaacgtcatggcagaatactgaa 283
Query: 1033 gaggaggagtttaattggggagatatgagtccaaaattagcagaacataatacaaataat 1092
||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 284 gaggaggagttcgattgggaagatatgagtccaacattagtagaacataatagaaataat 343
Query: 1093 ggttatctgcagtcaactactggtttcaccacgggaaagccagttatcgttggagctaac 1152
|||| ||||||||||||||||||||||||||||| || |||||||| |||| ||||||
Sbjct: 344 ggttttctgcagtcaactactggtttcaccacggaaatgccagttactgttgcagctaat 403
Query: 1153 gcaatttcttctgagcaagataccaggaagggttggtctagtgggtctcagcttcctcct 1212
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 404 gcaatttcttctgagcaagataccaggacgggttggtctagtgggtctcagcttcttccg 463
Query: 1213 gttgatgattcctcagttatagcagaagatgcattcacctcttcagcttattctggtgta 1272
||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||
Sbjct: 464 gttgatgattcctcagttatagccgaagatgtattcgcctcttcagcttattctcgtgta 523
Query: 1273 tcactgggtcaggtatctggattccagaacccaataaatcagagtcaaggctctggt 1329
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 524 ccactgggtcaggtatctggattccagaatccaataaatcagagtctaggctctggt 580
Score = 216 bits (109), Expect = 5e-55
Identities = 175/195 (89%), Gaps = 9/195 (4%)
Strand = Plus / Plus
Query: 782 ctcctcatcatgcagttgattatggagtagttaaaacattaggtagagaagtagagttga 841
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 ctcctcatcatgcagttgattatggagtagttaa--cattaggtagagaagaagagttga 58
Query: 842 gtgaatggcagagaaagcagttttctggtgaaggtccgaagagatttcaaacttctaaga 901
||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct: 59 gtgaatggcagagaaagcagttttctggtgatagtcggaagagatttcaaact------a 112
Query: 902 caacatacagtcttat-taatggacaacagcgtcaaagtccaagagctctaattgatgca 960
|||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 113 tgacatacagtcttatgtaacggacaacagcgtcaaagtcctagagctctgattgatgca 172
Query: 961 tttggaggtgacaaa 975
| |||| ||||||||
Sbjct: 173 tatggaagtgacaaa 187
>gnl|LJGI|TC76319 similar to UniRef100_Q9ZS85 Cluster: T4B21.1 protein; n=1;
Arabidopsis thaliana|Rep: T4B21.1 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 695
Score = 509 bits (257), Expect = e-143
Identities = 257/257 (100%)
Strand = Plus / Plus
Query: 1 atgagcagcaatgacatgatggggcagaagcttccccctccgacactggtggatcgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atgagcagcaatgacatgatggggcagaagcttccccctccgacactggtggatcgattc 275
Query: 61 aaggctctactccggcgacgcgatgatgaccctcgctttagggcttccgaagagattgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaggctctactccggcgacgcgatgatgaccctcgctttagggcttccgaagagattgtc 335
Query: 121 cagatttacgagctcttgttgtctgaactcacctgcaatctcaagcccatcatcaccgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagatttacgagctcttgttgtctgaactcacctgcaatctcaagcccatcatcaccgat 395
Query: 181 ctcaccatcatcgccgagcagcagagggaacacgctgagggcattgctgatgctatttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcaccatcatcgccgagcagcagagggaacacgctgagggcattgctgatgctatttgc 455
Query: 241 accaggattctcgaggt 257
|||||||||||||||||
Sbjct: 456 accaggattctcgaggt 472
>gnl|LJGI|AV769223 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_179, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 375
Score = 303 bits (153), Expect = 3e-81
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 2263 ggaacaacagcaggcttgaacaggtcacaattaggccccatcattcatgctaagtgcaga 2322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaacaacagcaggcttgaacaggtcacaattaggccccatcattcatgctaagtgcaga 316
Query: 2323 tctgaatctagtgtggctccatttaatgattttgcgctggatgaagggggcaccagtgag 2382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgaatctagtgtggctccatttaatgattttgcgctggatgaagggggcaccagtgag 256
Query: 2383 gaagggagtaaaagaaaacgaatgcggcattga 2415
|||||||||||||||||||||||||||||||||
Sbjct: 255 gaagggagtaaaagaaaacgaatgcggcattga 223
>gnl|LJGI|BP083927 similar to UniRef100_Q6IGC4 Cluster: HDC06630; n=1; Drosophila
melanogaster|Rep: HDC06630 - Drosophila melanogaster
(Fruit fly), partial (13%)
Length = 368
Score = 200 bits (101), Expect = 3e-50
Identities = 134/145 (92%)
Strand = Plus / Plus
Query: 1566 tgctagaaatacacatttgtcaaacgcgccaccaaatatggcattccctttacccggcca 1625
|||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||
Sbjct: 220 tgctcgaaatacacatttgtcaaatgcgccaccaaacatgccattccctttaccaggcca 279
Query: 1626 aaatatggtgaataactcttttcatttgctgggggcagccttgccacccttacatccagc 1685
||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||
Sbjct: 280 aaatatggtgaataactctttacattttctggggggagccttgcgacccttacatccagc 339
Query: 1686 ccgacccccattgctacctcatcct 1710
||| || ||||||||||||||||||
Sbjct: 340 ccggccgccattgctacctcatcct 364