Miyakogusa Predicted Gene
- Lj1g3v0052560.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0052560.1 Non Chatacterized Hit- tr|E0CVM0|E0CVM0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,66.71,0,coiled-coil,NULL; HOMEOBOX_2,Homeodomain;
START,Lipid-binding START; Homeodomain,Homeodomain; in
StA,gene.g28760.t1.1
(2187 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75175 homologue to UniRef100_A7PXH2 Cluster: Chromoso... 103 5e-21
gnl|LJGI|AV428630 homologue to UniRef100_O23045 Cluster: YUP8H12... 62 2e-08
gnl|LJGI|TC77608 homologue to UniRef100_A7PXH2 Cluster: Chromoso... 58 2e-07
>gnl|LJGI|TC75175 homologue to UniRef100_A7PXH2 Cluster: Chromosome chr12
scaffold_36, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_36, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 831
Score = 103 bits (52), Expect = 5e-21
Identities = 157/192 (81%)
Strand = Plus / Plus
Query: 192 gaagaagggctaccaccgccacaccacgcaccagattcaccaaatggaattgttctacaa 251
||||||| | ||||| ||||||||| ||||||||| || |||||||| || | |||
Sbjct: 450 gaagaagcgttaccatcgccacacccagcaccagatccaggaaatggaagcttttttcaa 509
Query: 252 gcattgtcctcacccggatgacaagcaaagaaaagagctgagcggcgagctggggttagc 311
| | ||||||||||| |||||||||||||| || ||||| ||| | ||| | |||||||
Sbjct: 510 ggagtgtcctcacccagatgacaagcaaaggaaggagctaagccgggagttagggttaga 569
Query: 312 gcctttgcaaatcaagttttggttccagaacaagcgcactcagatgaaggctcaaagtga 371
||| ||||| | ||||||||||| || ||||||||||||||||||||| | ||| |||
Sbjct: 570 gccattgcaggttaagttttggtttcaaaacaagcgcactcagatgaagacccaacatga 629
Query: 372 acgccaggagaa 383
|||||| |||||
Sbjct: 630 acgccatgagaa 641
>gnl|LJGI|AV428630 homologue to UniRef100_O23045 Cluster: YUP8H12.16 protein; n=1;
Arabidopsis thaliana|Rep: YUP8H12.16 protein -
Arabidopsis thaliana (Mouse-ear cress), partial (9%)
Length = 342
Score = 61.9 bits (31), Expect = 2e-08
Identities = 115/143 (80%)
Strand = Plus / Plus
Query: 200 gctaccaccgccacaccacgcaccagattcaccaaatggaattgttctacaagcattgtc 259
|||||||||| ||||| ||||||||| || ||||||||| || | |||| | || |
Sbjct: 200 gctaccaccggcacactcagcaccagatccaggaaatggaatcttttttcaaggagtgcc 259
Query: 260 ctcacccggatgacaagcaaagaaaagagctgagcggcgagctggggttagcgcctttgc 319
| ||||| ||||||||||| || || ||| ||||| | ||| | ||||||| ||| ||||
Sbjct: 260 cacaccctgatgacaagcagaggaaggagttgagcagggagttagggttagagccattgc 319
Query: 320 aaatcaagttttggttccagaac 342
| ||||||||||||||||||||
Sbjct: 320 aggtcaagttttggttccagaac 342
>gnl|LJGI|TC77608 homologue to UniRef100_A7PXH2 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 698
Score = 58.0 bits (29), Expect = 2e-07
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 1645 agtgctgcaacttccttatggcttccagtccctccaaagagggtttttgatttccttcgt 1704
|||||||||||||| || ||||||||||| || || |||||||| ||||| || || ||
Sbjct: 455 agtgctgcaacttctttttggcttccagtgccacctaagagggtctttgaatttctccgc 514
Query: 1705 gatgcaaacagtaggagtcagtgggatattctctccaatgg 1745
|||| ||| ||| ||| |||||||||| || ||||||||
Sbjct: 515 gatgagaactctagaagtgagtgggatatcctttccaatgg 555