Miyakogusa Predicted Gene

Lj1g3v0052380.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0052380.1 Non Chatacterized Hit- tr|I1JKM9|I1JKM9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.4975
PE=,84.96,0,ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Zinc finger, RING/FYVE/PHD-type;
RI,NODE_48212_length_1264_cov_72.564873.path1.1
         (345 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59847 similar to UniRef100_UPI0000162BE2 Cluster: zin...   684   0.0  

>gnl|LJGI|TC59847 similar to UniRef100_UPI0000162BE2 Cluster: zinc finger
            (CCCH-type/C3HC4-type RING finger) family protein; n=1;
            Arabidopsis thaliana|Rep: zinc finger
            (CCCH-type/C3HC4-type RING finger) family protein -
            Arabidopsis thaliana, partial (37%)
          Length = 1371

 Score =  684 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgcatgatcgaggggactacaagtctggatggcaattggagaaagactgggatgatgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  atgcatgatcgaggggactacaagtctggatggcaattggagaaagactgggatgatgct 749

                                                                        
Query: 61   gagaaagcaaggaagatgagattggctgcgggtgaggatgcagttgaggagggtgctaat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gagaaagcaaggaagatgagattggctgcgggtgaggatgcagttgaggagggtgctaat 809

                                                                        
Query: 121  gtcacggatgaagaggacgatgattcattaccatttgcgtgtttcatctgtagacagcca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  gtcacggatgaagaggacgatgattcattaccatttgcgtgtttcatctgtagacagcca 869

                                                                        
Query: 181  tttgtggatcctgttgtaaccaagtgcaagcactacttctgcgagcattgtgcattgaag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  tttgtggatcctgttgtaaccaagtgcaagcactacttctgcgagcattgtgcattgaag 929

                                                                        
Query: 241  catcacgcaaagaataaaaagtgttttgtctgcaaccagccaacactcggcacttttaat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  catcacgcaaagaataaaaagtgttttgtctgcaaccagccaacactcggcacttttaat 989

                                                         
Query: 301  gttgctcaggagatacgcaagaagatggctgaggataataaataa 345
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  gttgctcaggagatacgcaagaagatggctgaggataataaataa 1034