Miyakogusa Predicted Gene

Lj1g3v0051020.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0051020.1 Non Chatacterized Hit- tr|G4LW35|G4LW35_SCHMA
Histone deacetylase,putative OS=Schistosoma mansoni
GN,44.23,5e-19,Ubiquitin Carboxyl-terminal Hydrolase-like z,Zinc
finger, UBP-type; seg,NULL; ZF_UBP,Zinc finger, UB,CUFF.25127.1
         (450 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV428862 weakly similar to UniRef100_A7QL52 Cluster: Ch...   658   0.0  

>gnl|LJGI|AV428862 weakly similar to UniRef100_A7QL52 Cluster: Chromosome chr3
           scaffold_117, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr3 scaffold_117, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (34%)
          Length = 462

 Score =  658 bits (332), Expect = 0.0
 Identities = 377/392 (96%)
 Strand = Plus / Plus

                                                                       
Query: 56  acggctctgaatctggttgggtcgatgctcgaacttgttgcgatcacctcgcctccttat 115
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   acggctctgaatctggttgggtcgatgctcgaacttgctgcgatcacctcgcctccttat 60

                                                                       
Query: 116 cactcgatcttacccatattccaatccccaacactccctgcaacaggtgccaacatccga 175
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 61  cactcgatcttacccatattccaatccccaacactccctgtaacaggtgccaacattcga 120

                                                                       
Query: 176 ctgaaaactggttgtgtttgtcatgcaaggacgtgctctgtagccgctttgtcaacaagc 235
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 ctgaaaactgtttgtgtttgtcatgcatggacgtgctctgtagccgctttgtcaacaagc 180

                                                                       
Query: 236 atatgctccaccattttcaggacacaaatcattctgtggccctcagtttcagtgatctct 295
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 181 atatgctccaccattttcaggacacaaatcattctgtggccctcagattcagagatctct 240

                                                                       
Query: 296 cagtctggtgtttctcttgtgacgcttacttggatgctcaacttattgcacaactgcgtc 355
           ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| 
Sbjct: 241 cagtctggtgtatctcttgagacgcttacttggatgctgaacttattgcacaactgcgtg 300

                                                                       
Query: 356 ctgtttatcaacttgcctacctgttgaaatttggcgagcccccgccattgcgaccaactc 415
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 ctgtttataaacttgcctacctgttgaaatttggcgagcccccggcattgcgaccaactc 360

                                           
Query: 416 aacttccttctattcaaacttcatctggaatt 447
           ||||| |||||||||| |||||||||||||||
Sbjct: 361 aacttgcttctattcagacttcatctggaatt 392