Miyakogusa Predicted Gene

Lj1g3v0050930.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v0050930.1 Non Chatacterized Hit- tr|J3LT23|J3LT23_ORYBR
Uncharacterized protein (Fragment) OS=Oryza brachyanth,56.96,3e-19,no
description,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; SWIB,SWIB/MDM2
domain; SWI complex, BAF60b d,CUFF.25123.1
         (399 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59302 similar to UniRef100_A7QW78 Cluster: Chromosome...   626   e-179

>gnl|LJGI|TC59302 similar to UniRef100_A7QW78 Cluster: Chromosome chr3 scaffold_199,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_199, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (55%)
          Length = 822

 Score =  626 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 84  cactcttcgcatggttcgacccgtcgtcacctccgccaccgtctctcagccttctgccgc 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cactcttcgcatggttcgacccgtcgtcacctccgccaccgtctctcagccttctgccgc 178

                                                                       
Query: 144 cggcaacaaaatccgtggtatcatgaaaccccgcaaaatctcccctgagatgcaatccat 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cggcaacaaaatccgtggtatcatgaaaccccgcaaaatctcccctgagatgcaatccat 238

                                                                       
Query: 204 ctgcggcgtccccgagatttctcgtactcaagcactcaaacacatttgggcctacattaa 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctgcggcgtccccgagatttctcgtactcaagcactcaaacacatttgggcctacattaa 298

                                                                       
Query: 264 ggaaaacaatcttcaggaccctgaaaacaagaagcttatacggtgtgatgagaagctgaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggaaaacaatcttcaggaccctgaaaacaagaagcttatacggtgtgatgagaagctgaa 358

                                                                       
Query: 324 gaaggtatttgcagggaaagatgaagttggcatgctcgagattgctgggttgattagccc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaaggtatttgcagggaaagatgaagttggcatgctcgagattgctgggttgattagccc 418

                           
Query: 384 tcactttcttaaatga 399
           ||||||||||||||||
Sbjct: 419 tcactttcttaaatga 434