Miyakogusa Predicted Gene

Lj0g3v0364339.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0364339.1 tr|D5VUA3|D5VUA3_METIM AAA family ATPase, CDC48
subfamily OS=Methanocaldococcus infernus (strain
DSM,27.48,1e-17,seg,NULL; NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE
(NUCLEAR VCP-LIKE PROTEIN),NULL; AAA-FAMILY ATPASE,gene.g28663.t1.1
         (2361 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66646 weakly similar to UniRef100_A7QBR7 Cluster: Chr...   704   0.0  

>gnl|LJGI|TC66646 weakly similar to UniRef100_A7QBR7 Cluster: Chromosome chr1
            scaffold_75, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr1 scaffold_75, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (13%)
          Length = 616

 Score =  704 bits (355), Expect = 0.0
 Identities = 364/367 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1836 agagcagcggaaggatgtttatgtgattggtacaacaaataggcctgaggcggtggatcg 1895
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2    agagcagcggaaggatgtttatgtgattggtacaacaaataggcctgaggcggtggatcg 61

                                                                        
Query: 1896 cgctattttacagcctggtaggcttggaaaacatctttatgttcctcacccaagtccaga 1955
            |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 62   cgctattttatagcctggtaggcttggaaagcatctttatgttcctcacccaagtccaga 121

                                                                        
Query: 1956 agatcgggttaagatattgaaagctcttgcaagagatacgcgccttgatgccggtgtgga 2015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  agatcgggttaagatattgaaagctcttgcaagagatacgcgccttgatgccggtgtgga 181

                                                                        
Query: 2016 tttgaatgtcataggaagaatggaagcttgtgaaaacatgagtggtgctgaacttagggc 2075
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  tttgaatgtcataggaagaatggaagcttgtgaaaacatgagtggtgctgaacttagggc 241

                                                                        
Query: 2076 actgatgggcgaagtggaaagggatgctcgtagagaggtaagggccggaactaatacaac 2135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  actgatgggcgaagtggaaagggatgctcgtagagaggtaagggccggaactaatacaac 301

                                                                        
Query: 2136 ccgtaccatcaagacacatcattttgatgcagcgttcagtaaaatctctgcctctaagtc 2195
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  ccgtaccatcaagacacttcattttgatgcagcgttcagtaaaatctctgcctctaagtc 361

                   
Query: 2196 agacaag 2202
            |||||||
Sbjct: 362  agacaag 368



 Score =  190 bits (96), Expect = 3e-47
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2266 ggtgacatgctttcaagttggcagcttctgacaaagctaatctccattcttgcactttat 2325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368  ggtgacatgctttcaagttggcagcttctgacaaagctaatctccattcttgcactttat 427

                                                
Query: 2326 gagagtcttttcccagtagcctattttcatgattag 2361
            ||||||||||||||||||||||||||||||||||||
Sbjct: 428  gagagtcttttcccagtagcctattttcatgattag 463