Miyakogusa Predicted Gene
- Lj0g3v0364329.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0364329.1 tr|A9SZZ9|A9SZZ9_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,45.97,1e-18,In Spt5p, this domain may confer affinity
fo,Transcription antitermination protein, NusG,
N-terminal,gene.g28661.t1.1
(1260 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS350429 weakly similar to UniRef100_A7NSK9 Cluster: Ch... 672 0.0
gnl|LJGI|BW596992 weakly similar to UniRef100_A8JII6 Cluster: Pr... 289 2e-77
gnl|LJGI|BP075060 111 1e-23
>gnl|LJGI|FS350429 weakly similar to UniRef100_A7NSK9 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (7%)
Length = 617
Score = 672 bits (339), Expect = 0.0
Identities = 342/343 (99%)
Strand = Plus / Minus
Query: 918 gaaaactctcacactgaacaaaaaggaactctgtaaatattttgaacctggaagtcatgt 977
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 574 gaaaactctcacactgaacaaaaaggaactctgtaaatattttgaacttggaagtcatgt 515
Query: 978 taaagttgttgctggtgctgaagagggtgaaactggcatggttgttaaggtggagcagca 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taaagttgttgctggtgctgaagagggtgaaactggcatggttgttaaggtggagcagca 455
Query: 1038 tgtcatggtcatcatatctgataccacaaaacaacaaatctgcgtgtttgctgatcatgt 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgtcatggtcatcatatctgataccacaaaacaacaaatctgcgtgtttgctgatcatgt 395
Query: 1098 catggagagttctggagttatcgcaggaggttccagctccaatggtgaaagaaagagtga 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catggagagttctggagttatcgcaggaggttccagctccaatggtgaaagaaagagtga 335
Query: 1158 tgtctactcaagattctccattcatgggactccaccagctggtatttcacaacccctaag 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtctactcaagattctccattcatgggactccaccagctggtatttcacaacccctaag 275
Query: 1218 gaggtttcgtggagggcctacccggaaaattgcaatttgttga 1260
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaggtttcgtggagggcctacccggaaaattgcaatttgttga 232
Score = 87.7 bits (44), Expect = 2e-16
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 739 aaaaagaaggcatttgttcctccacatcgcatcaatgaagcaag 782
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaagaaggcatttgttcctccacatcgcatcaatgaagcaag 574
>gnl|LJGI|BW596992 weakly similar to UniRef100_A8JII6 Cluster: Predicted protein; n=1;
Chlamydomonas reinhardtii|Rep: Predicted protein -
Chlamydomonas reinhardtii, partial (5%)
Length = 452
Score = 289 bits (146), Expect = 2e-77
Identities = 149/150 (99%)
Strand = Plus / Plus
Query: 1 atggactgtgatcaggagaaaggagtggccgaggagaaaggaggagtcagcaggaagcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atggactgtgatcaggagaaaggagtggccgaggagaaaggaggagtcagcaggaagcgg 349
Query: 61 agaagatctctccaagtggaaaaggacaatgaggaaaatgttggccggaggcgccggtat 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 agaagatctctccaagtggaaaaggacaatgaggaaaatgttggtcggaggcgccggtat 409
Query: 121 aagaataagtctgtttcgagttttttcgac 150
||||||||||||||||||||||||||||||
Sbjct: 410 aagaataagtctgtttcgagttttttcgac 439
>gnl|LJGI|BP075060
Length = 341
Score = 111 bits (56), Expect = 1e-23
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1165 tcaagattctccattcatgggactccaccagct-ggtatttcacaacccctaaggaggtt 1223
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 336 tcaagattctccattcatgggactccaccccctcggtatttcacaacccctaaggaggtt 277
Query: 1224 tcgtggagggcctacccgga 1243
| |||||||||||||||||
Sbjct: 276 ttctggagggcctacccgga 257