Miyakogusa Predicted Gene

Lj0g3v0364159.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0364159.1 Non Chatacterized Hit- tr|B9RZG9|B9RZG9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.52,1e-16,B3,B3 DNA binding domain; no description,DNA-binding
pseudobarrel domain; DNA-binding pseudobarrel d,CUFF.25085.1
         (576 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73841 similar to UniRef100_A7P9A4 Cluster: Chromosome...    78   7e-14
gnl|LJGI|TC78770 weakly similar to UniRef100_A9SGA4 Cluster: Pre...    70   2e-11

>gnl|LJGI|TC73841 similar to UniRef100_A7P9A4 Cluster: Chromosome chr3 scaffold_8,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_8, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (6%)
          Length = 480

 Score = 77.8 bits (39), Expect = 7e-14
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 445 aagttgtctaaaggttggataatatttgcaaaagaaagtaaacttgtaggtggagatgtt 504
           |||||||| |||||||||    ||||||||  |||||||||| | |||| ||||||||||
Sbjct: 201 aagttgtccaaaggttgggccctatttgcaggagaaagtaaattggtagctggagatgtt 260

                                  
Query: 505 tgtgtgtttgagctcatcaacaa 527
           ||||| |||||||||||||||||
Sbjct: 261 tgtgtctttgagctcatcaacaa 283


>gnl|LJGI|TC78770 weakly similar to UniRef100_A9SGA4 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (17%)
          Length = 516

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 167/211 (79%)
 Strand = Plus / Plus

                                                                       
Query: 320 gaccgcctgtacccatttccttcatcagagagtacttgaatgagaagaagcaaatcataa 379
           |||||| |||||| | | ||||||||||||||||||| ||||| | | |||| | |||||
Sbjct: 91  gaccgcgtgtaccaaatcccttcatcagagagtacttcaatgacatgcagcagaccataa 150

                                                                       
Query: 380 atttaaagattgaagaaaaattgtggcctgtggagtttatatattatccagaatttggtt 439
             ||| ||   ||| | ||||||||||||||| |||| || | ||||||  ||   ||||
Sbjct: 151 tgttacagtacgaaaagaaattgtggcctgtgaagttgatctgttatcccaaaaaaggtt 210

                                                                       
Query: 440 taggaaagttgtctaaaggttggataatatttgcaaaagaaagtaaacttgtaggtggag 499
            ||| ||||||||  |||||||| |   ||||||   | |||||||| | |||| |||||
Sbjct: 211 caggcaagttgtcccaaggttgggtcgaatttgctggaaaaagtaaattggtagttggag 270

                                          
Query: 500 atgtttgtgtgtttgagctcatcaacaagga 530
           ||| ||||||||||||||||||||| |||||
Sbjct: 271 atgcttgtgtgtttgagctcatcaataagga 301