Miyakogusa Predicted Gene

Lj0g3v0359789.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0359789.1 tr|A9T0W7|A9T0W7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_217831,58.57,2e-19,no description,Nucleotide-binding,
alpha-beta plait; seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.24763.1
         (351 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58721 similar to UniRef100_Q2HTD6 Cluster: RNA-bindin...   678   0.0  
gnl|LJGI|TC59691 similar to UniRef100_Q2HTD6 Cluster: RNA-bindin...   287   2e-77
gnl|LJGI|TC61112 similar to UniRef100_A7P6G1 Cluster: Chromosome...   127   5e-29

>gnl|LJGI|TC58721 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand; n=1;
           Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand - Medicago
           truncatula (Barrel medic), partial (13%)
          Length = 797

 Score =  678 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattacagaggggaacatttcacggccaagcgcaacgcctttgtcatacatggaggca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 452 atgattacagaggggaacatttcacggccaagggcaacgcctttgtcatacatggaggca 511

                                                                       
Query: 61  gcgatggaatttactcaactgctcccaatttcaacgaaacttccgcttctccttcaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcgatggaatttactcaactgctcccaatttcaacgaaacttccgcttctccttcaagcc 571

                                                                       
Query: 121 gtcgagggtgttggtccaggagttgaaagcatcgagctcattaaggaccctcaaaatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtcgagggtgttggtccaggagttgaaagcatcgagctcattaaggaccctcaaaatcca 631

                                                                       
Query: 181 agtaagaatcgtgggtttgcttttgttttgtattacaacaatgcatgtgctgattattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agtaagaatcgtgggtttgcttttgttttgtattacaacaatgcatgtgctgattattca 691

                                                                       
Query: 241 cgacaaaagatgccaagttcgagttttaatctatgtggaaatacaccaactgtcagatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cgacaaaagatgccaagttcgagttttaatctatgtggaaatacaccaactgtcagatgg 751

                                                         
Query: 301 gcagatccaaagaattcacctgatcattctgcttcttcacaggact 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gcagatccaaagaattcacctgatcattctgcttcttcacaggact 797


>gnl|LJGI|TC59691 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand; n=1;
           Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand - Medicago
           truncatula (Barrel medic), partial (45%)
          Length = 1132

 Score =  287 bits (145), Expect = 2e-77
 Identities = 172/181 (95%)
 Strand = Plus / Plus

                                                                       
Query: 163 aaggaccctcaaaatccaagtaagaatcgtgggtttgcttttgttttgtattacaacaat 222
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 2   aaggaccctcaaaatccaagcaagaatcgtgggtttgcttttgttttgtattacaataat 61

                                                                       
Query: 223 gcatgtgctgattattcacgacaaaagatgccaagttcgagttttaatctatgtggaaat 282
           || ||||||||||||||||| ||||||||| |||||||||||||||| |||| |||||||
Sbjct: 62  gcgtgtgctgattattcacggcaaaagatgtcaagttcgagttttaagctatatggaaat 121

                                                                       
Query: 283 acaccaactgtcagatgggcagatccaaagaattcacctgatcattctgcttcttcacag 342
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 122 acaccaactgtcacatgggcagatccaaagaattcacctgaccattctgcttcttcacag 181

            
Query: 343 g 343
           |
Sbjct: 182 g 182


>gnl|LJGI|TC61112 similar to UniRef100_A7P6G1 Cluster: Chromosome chr9 scaffold_7,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_7, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (49%)
          Length = 944

 Score =  127 bits (64), Expect = 5e-29
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                       
Query: 6   tacagaggggaacatttcacggccaagcgcaacgcctttgtcatacatggaggcagcgat 65
           |||||||| ||||||||| | |||||| ||||||| ||||||||||||||||||||||| 
Sbjct: 203 tacagaggcgaacatttcgccgccaagggcaacgcgtttgtcatacatggaggcagcgaa 262

                                                               
Query: 66  ggaatttactcaactgctcccaatttcaacgaaacttccgcttctccttcaa 117
           ||||| ||||||||| ||||||||| ||||||||||||  ||||| ||||||
Sbjct: 263 ggaatctactcaactactcccaattccaacgaaacttcaccttctgcttcaa 314