Miyakogusa Predicted Gene

Lj0g3v0359119.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0359119.2 Non Chatacterized Hit- tr|I1LTG6|I1LTG6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,71.43,0,FAMILY NOT
NAMED,NULL; AUX_IAA,AUX/IAA protein; CAD & PB1 domains,NULL;
IAA_ARF,Aux/IAA-ARF-dimerisa,CUFF.24706.2
         (735 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcrip...   646   0.0  
gnl|LJGI|TC82651 similar to UniRef100_A7PHQ5 Cluster: Chromosome...    54   1e-06

>gnl|LJGI|FS350751 similar to UniRef100_Q2HSV9 Cluster: Transcriptional factor B3;
           Auxin response factor; Aux/IAA_ARF_dimerisation; n=1;
           Medicago truncatula|Rep: Transcriptional factor B3;
           Auxin response factor; Aux/IAA_ARF_dimerisation -
           Medicago truncatula (Barrel medic), partial (17%)
          Length = 678

 Score =  646 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Minus

                                                                       
Query: 410 taaactcctgtaaactattcgggtttcctttgtctggggaaactagtccccaaaatttac 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taaactcctgtaaactattcgggtttcctttgtctggggaaactagtccccaaaatttac 619

                                                                       
Query: 470 agaaccctgctaaaaggagttgcacaaaggttcacaagcaaggaagcttagttggaagag 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agaaccctgctaaaaggagttgcacaaaggttcacaagcaaggaagcttagttggaagag 559

                                                                       
Query: 530 ccattgatctatcaagattgagtagctacaatgatctactgaatgaactagagaaactat 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccattgatctatcaagattgagtagctacaatgatctactgaatgaactagagaaactat 499

                                                                       
Query: 590 ttggcatggaaggccttctaaaagatcctgataagggatggaggatcctgtacactgaca 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttggcatggaaggccttctaaaagatcctgataagggatggaggatcctgtacactgaca 439

                                                                       
Query: 650 gtgagaatgacatcatggttgtaggggatgacccttggcatgagttttgtgatgtggtgt 709
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgagaatgacatcatggttgtaggggatgacccttggcatgagttttgtgatgtggtgt 379

                                     
Query: 710 ccaagatccatatatatacccaagaa 735
           ||||||||||||||||||||||||||
Sbjct: 378 ccaagatccatatatatacccaagaa 353


>gnl|LJGI|TC82651 similar to UniRef100_A7PHQ5 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (18%)
          Length = 757

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 16  tttccaagggtcttgcaaggtcaagaa 42
           |||||||||||||||||||||||||||
Sbjct: 81  tttccaagggtcttgcaaggtcaagaa 107